RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 H7BYZ3 331 aa13.49□□□□□ -0.25
CCDC28A-203ENST00000617445 RLN2P04090 185 aa13.49□□□□□ -0.25
CCDC28A-203ENST00000617445 TMEM88Q6PEY1 159 aa13.49□□□□□ -0.25
CCDC28A-203ENST00000617445 PLAC8L1A1L4L8 177 aa13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 H3BQ15 152 aa13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 SLC17A3O00476 420 aa13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 PRAF2O60831 178 aa13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 PRM2P04554 102 aa13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 AZU1P20160 251 aa13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 FAM3BP58499 235 aaPredicted RBP13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 TIMM8BQ9Y5J9 83 aaPredicted RBP13.48□□□□□ -0.25
CCDC28A-203ENST00000617445 CBY3A6NI87 242 aa13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 SNRPCP09234 159 aaKnown RBP13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 DEFB130BP0DP73 79 aa13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 DEFB130AP0DP74 79 aa13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 FGF7P21781 194 aa13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 CYCSP99999 105 aaKnown RBP13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 TMEM263Q8WUH6 116 aaKnown RBP13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 MRPL53Q96EL3 112 aaKnown RBP13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 ODF3Q96PU9 254 aa13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 SLC25A31Q9H0C2 315 aa13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 TMEM14CQ9P0S9 112 aa13.47□□□□□ -0.25
CCDC28A-203ENST00000617445 TRAV5A0A0B4J249 113 aa13.46□□□□□ -0.25
CCDC28A-203ENST00000617445 INMT-MINDY4F8WBC2 141 aa13.46□□□□□ -0.25
CCDC28A-203ENST00000617445 ATP5G1P05496 136 aa13.46□□□□□ -0.25
CCDC28A-203ENST00000617445 HTN1P15515 57 aa13.46□□□□□ -0.25
CCDC28A-203ENST00000617445 ATP5G3P48201 142 aa13.46□□□□□ -0.25
CCDC28A-203ENST00000617445 MARVELD1Q9BSK0 173 aa13.46□□□□□ -0.25
CCDC28A-203ENST00000617445 NMES1Q9C002 83 aa13.46□□□□□ -0.25
CCDC28A-203ENST00000617445 PRAC2D3DTV9 90 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 E5RGE8 158 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 H3BTX0 84 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 HIST1H1EP10412 219 aaKnown RBP13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 LEPP41159 167 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 PDE6HQ13956 83 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 CCDC28AQ8IWP9 274 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 RNASE8Q8TDE3 154 aaKnown RBP13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 ZNF586Q9NXT0 402 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 PRELID1Q9Y255 219 aa13.45□□□□□ -0.26
CCDC28A-203ENST00000617445 NPIPB6E9PJ23 425 aa13.44□□□□□ -0.26
CCDC28A-203ENST00000617445 NPCDR1Q9BY65 106 aa13.44□□□□□ -0.26
CCDC28A-203ENST00000617445 HECTD4Q9Y4D8 3996 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 NACAE9PAV3 2078 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 TRBV19A0A075B6N1 114 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 F5H768 121 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 M0R2N4 97 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 NHLH2Q02577 135 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 FCN2Q15485 313 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 GFI1BQ5VTD9 330 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 KCNIP2Q9NS61 270 aa13.43□□□□□ -0.26
CCDC28A-203ENST00000617445 CT45A10P0DMU9 189 aa13.42□□□□□ -0.26
CCDC28A-203ENST00000617445 Q6ZR54 194 aa13.42□□□□□ -0.26
CCDC28A-203ENST00000617445 OR5C1Q8NGR4 320 aa13.42□□□□□ -0.26
CCDC28A-203ENST00000617445 NOP10Q9NPE3 64 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-203ENST00000617445 TIMM9Q9Y5J7 89 aa13.42□□□□□ -0.26
CCDC28A-203ENST00000617445 PRB4P10163 310 aaPredicted RBP13.41□□□□□ -0.26
CCDC28A-203ENST00000617445 SOHLH1Q5JUK2 328 aa13.41□□□□□ -0.26
CCDC28A-203ENST00000617445 LINC00477Q96M19 166 aa13.41□□□□□ -0.26
CCDC28A-203ENST00000617445 PYGO2Q9BRQ0 406 aa13.41□□□□□ -0.26
CCDC28A-203ENST00000617445 ATG101Q9BSB4 218 aa13.41□□□□□ -0.26
CCDC28A-203ENST00000617445 AAMDCQ9H7C9 122 aa13.41□□□□□ -0.26
CCDC28A-203ENST00000617445 RTL8CO15255 209 aa13.4□□□□□ -0.26
CCDC28A-203ENST00000617445 SIX6O95475 246 aa13.4□□□□□ -0.26
CCDC28A-203ENST00000617445 SLC25A5P05141 298 aaKnown RBP13.4□□□□□ -0.26
CCDC28A-203ENST00000617445 KIR3DS1Q14943 382 aa13.4□□□□□ -0.26
CCDC28A-203ENST00000617445 IGLV2-18A0A075B6J9 118 aa13.39□□□□□ -0.27
CCDC28A-203ENST00000617445 PRSS29PA6NIE9 313 aa13.39□□□□□ -0.27
CCDC28A-203ENST00000617445 NDUFB4O95168 129 aa13.39□□□□□ -0.27
CCDC28A-203ENST00000617445 LINC00612Q8N6U2 182 aa13.39□□□□□ -0.27
CCDC28A-203ENST00000617445 THAP6Q8TBB0 222 aa13.39□□□□□ -0.27
CCDC28A-203ENST00000617445 PARD6GQ9BYG4 376 aaPredicted RBP13.39□□□□□ -0.27
CCDC28A-203ENST00000617445 OR5AC2Q9NZP5 309 aa13.39□□□□□ -0.27
CCDC28A-203ENST00000617445 TRAV12-3A0A0B4J271 114 aa13.38□□□□□ -0.27
CCDC28A-203ENST00000617445 A0A1B0GVY2 172 aa13.38□□□□□ -0.27
CCDC28A-203ENST00000617445 SNURFLB1AK76 121 aa13.38□□□□□ -0.27
CCDC28A-203ENST00000617445 C17orf112F2Z3M2 114 aa13.38□□□□□ -0.27
CCDC28A-203ENST00000617445 CCL18P55774 89 aa13.38□□□□□ -0.27
CCDC28A-203ENST00000617445 LRRC37A5PQ49AS3 106 aa13.38□□□□□ -0.27
CCDC28A-203ENST00000617445 MRPL32Q9BYC8 188 aaKnown RBP13.38□□□□□ -0.27
CCDC28A-203ENST00000617445 H0YIZ8 118 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 M0R3E3 92 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 SSNA1O43805 119 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 NUDT3O95989 172 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 NMBP08949 121 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 PET100P0DJ07 73 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 PYYP10082 97 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 DAZ2Q13117 558 aaKnown RBP13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 CLINT1Q14677 625 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 GCSAMLQ5JQS6 135 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 BLNKQ8WV28 456 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 FAM167A-AS1Q96KT0 104 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 SLC25A2Q9BXI2 301 aa13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 WDR61Q9GZS3 305 aaKnown RBP13.37□□□□□ -0.27
CCDC28A-203ENST00000617445 C7orf71A4D174 169 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 KLLNB2CW77 178 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 J3KRW8 73 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 NBEAP1P0C6P0 100 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 C9orf47Q6ZRZ4 202 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 PPP1R1CQ8WVI7 109 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 ZNF503Q96F45 646 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms