RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 MRPL53Q96EL3 112 aaKnown RBP9.53□□□□□ -0.88
TRIM28-211ENST00000597968 DNAJC4Q9NNZ3 241 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 NUDT15Q9NV35 164 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 C5orf51A6NDU8 294 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 FAM24AA6NFZ4 105 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 H2AFB2P0C5Z0 115 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 PVALBP20472 110 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-211ENST00000597968 CAMLGP49069 296 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 BCAP31P51572 246 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 CLINT1Q14677 625 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 SAT2Q96F10 170 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-211ENST00000597968 MGST2Q99735 147 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 PYGO2Q9BRQ0 406 aa9.52□□□□□ -0.89
TRIM28-211ENST00000597968 NACAE9PAV3 2078 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 A0A1W2PPQ1 181 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 SNURFLB1AK76 121 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 CDK2AP2O75956 126 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 CST7O76096 145 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 HTN1P15515 57 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 M6PRP20645 277 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 LEPP41159 167 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 RPL29P47914 159 aaKnown RBP9.51□□□□□ -0.89
TRIM28-211ENST00000597968 DAZ2Q13117 558 aaKnown RBP9.51□□□□□ -0.89
TRIM28-211ENST00000597968 VWC2Q2TAL6 325 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 MORN5Q5VZ52 161 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 RXFP4Q8TDU9 374 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 RNF141Q8WVD5 230 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 C18orf15Q96N68 181 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 UPK3BQ9BT76 320 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 C11orf1Q9H5F2 150 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 NOP10Q9NPE3 64 aaKnown RBP9.51□□□□□ -0.89
TRIM28-211ENST00000597968 LINC00588Q9Y4M8 146 aa9.51□□□□□ -0.89
TRIM28-211ENST00000597968 FAM240BA0A1B0GVZ2 78 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 NPIPB6E9PJ23 425 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 H3BTX0 84 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 RLN2P04090 185 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 S100A11P31949 105 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 CAV2P51636 162 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 PDE6HQ13956 83 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 OPCMLQ14982 345 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 FCN2Q15485 313 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 GFI1BQ5VTD9 330 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 GNPNAT1Q96EK6 184 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-211ENST00000597968 C2orf50Q96LR7 162 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 LINC00467Q9BRT7 94 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 CCDC32Q9BV29 185 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 Q9H8V8 135 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 UQCC1Q9NVA1 299 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 PRELID1Q9Y255 219 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 WDR83OSQ9Y284 106 aa9.5□□□□□ -0.89
TRIM28-211ENST00000597968 LRP1BQ9NZR2 4599 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 MPDU1O75352 247 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 SLC25A5P05141 298 aaKnown RBP9.49□□□□□ -0.89
TRIM28-211ENST00000597968 NMBP08949 121 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 HBG1P69891 147 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 HBG2P69892 147 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 ATP6V1FQ16864 119 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 SSX7Q7RTT5 188 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 NRARPQ7Z6K4 114 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 ZNF680Q8NEM1 530 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 TMEM14CQ9P0S9 112 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 HSPG2P98160 4391 aa9.49□□□□□ -0.89
TRIM28-211ENST00000597968 TRAV5A0A0B4J249 113 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 C16orf90A8MZG2 172 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 SLC17A3O00476 420 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 SULT1A1P50225 295 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 S100A10P60903 97 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 TNP2Q05952 138 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 IL15RAQ13261 267 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 RAB32Q13637 225 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 MIC13Q5XKP0 118 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 ZNF575Q86XF7 245 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 STX12Q86Y82 276 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 Q9H3A6 140 aa9.48□□□□□ -0.89
TRIM28-211ENST00000597968 LYRM2Q9NU23 88 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-211ENST00000597968 TRAV26-1A0A087WT03 109 aa9.47□□□□□ -0.89
TRIM28-211ENST00000597968 IGSF23A1L1A6 192 aa9.47□□□□□ -0.89
TRIM28-211ENST00000597968 H3BQ15 152 aa9.47□□□□□ -0.89
TRIM28-211ENST00000597968 OR5I1Q13606 314 aa9.47□□□□□ -0.89
TRIM28-211ENST00000597968 LINC00477Q96M19 166 aa9.47□□□□□ -0.89
TRIM28-211ENST00000597968 ABCA13Q86UQ4 5058 aa9.46□□□□□ -0.89
TRIM28-211ENST00000597968 TRBV19A0A075B6N1 114 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 PRAC2D3DTV9 90 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 SIX6O95475 246 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 CT45A10P0DMU9 189 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 HIST1H1EP10412 219 aaKnown RBP9.46□□□□□ -0.9
TRIM28-211ENST00000597968 IFITM3Q01628 133 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 ANXA2RQ3ZCQ2 193 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 MZT2BQ6NZ67 158 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 LINC00299Q6ZSB3 139 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 TMEM252Q8N6L7 170 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 SLC39A9Q9NUM3 307 aa9.46□□□□□ -0.9
TRIM28-211ENST00000597968 MRPS16Q9Y3D3 137 aaKnown RBP9.46□□□□□ -0.9
TRIM28-211ENST00000597968 TRAV12-3A0A0B4J271 114 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 TRBV7-9A0A0J9YWB2 115 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 UBE2L5PA0A1B0GUS4 154 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 KLLNB2CW77 178 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 ASAH1Q13510 395 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 KIR3DS1Q14943 382 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 FAM19A4Q96LR4 140 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms