RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	ZNF672	Q499Z4	452 aa	Predicted RBP	13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	SIGLEC8	Q9NYZ4	499 aa		13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	COL6A6	A6NMZ7	2263 aa		13.42	□□□□□ -0.26
VPS53-215	ENST00000573028	NPIPB5	A8MRT5	1133 aa		13.42	□□□□□ -0.26
VPS53-215	ENST00000573028	HLA-DMB	P28068	263 aa		13.42	□□□□□ -0.26
VPS53-215	ENST00000573028	DPM3	Q9P2X0	92 aa		13.42	□□□□□ -0.26
VPS53-215	ENST00000573028	PTPRQ	Q9UMZ3	2332 aa		13.42	□□□□□ -0.26
VPS53-215	ENST00000573028	CACNG7	P62955	275 aa		13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	TWIST1	Q15672	202 aa		13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	C16orf54	Q6UWD8	224 aa		13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	DEFB125	Q8N687	156 aa		13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	NAA38	Q9BRA0	125 aa	Known RBP	13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	TRAV30	A0A087WSZ9	112 aa		13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	HIST1H1A	Q02539	215 aa	Predicted RBP	13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	ANKRD39	Q53RE8	183 aa		13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	MS4A6A	Q9H2W1	248 aa		13.41	□□□□□ -0.26
VPS53-215	ENST00000573028	PSG9	Q00887	426 aa		13.4	□□□□□ -0.26
VPS53-215	ENST00000573028	CKS2	P33552	79 aa		13.4	□□□□□ -0.26
VPS53-215	ENST00000573028	MFAP4	P55083	255 aa		13.4	□□□□□ -0.26
VPS53-215	ENST00000573028	C18orf15	Q96N68	181 aa		13.4	□□□□□ -0.26
VPS53-215	ENST00000573028	COX8A	P10176	69 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	RHOG	P84095	191 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	PAX2	Q02962	417 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	ORMDL3	Q8N138	153 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	LY6L	H3BQJ8	138 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028		A0A096LNJ9	63 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	TRAV8-6	A0A0B4J262	113 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	MRPS12	O15235	138 aa	Known RBP	13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	ORM1	P02763	201 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	MRPL51	Q4U2R6	128 aa	Known RBP	13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	FAM104B	Q5XKR9	115 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	LYPD1	Q8N2G4	141 aa		13.39	□□□□□ -0.27
VPS53-215	ENST00000573028	PPIF	P30405	207 aa	Known RBP	13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	NDP	Q00604	133 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	C2orf91	Q6ZV80	131 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	FANCD2OS	Q96PS1	177 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	VGLL1	Q99990	258 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	C21orf62	Q9NYP8	219 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	IGHV3OR16-13	A0A075B7E8	117 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	IGHV3-74	A0A0B4J1X5	117 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	C7orf71	A4D174	169 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	EGR2	P11161	476 aa	Predicted RBP	13.38	□□□□□ -0.27
VPS53-215	ENST00000573028		Q6AWC8	147 aa		13.38	□□□□□ -0.27
VPS53-215	ENST00000573028	NMU	P48645	174 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	C5orf64	Q2M2E5	130 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	VPS25	Q9BRG1	176 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	MSRB1	Q9NZV6	116 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	THYN1	Q9P016	225 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	IGHV3-66	A0A0C4DH42	116 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	RAB1B	Q9H0U4	201 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	TRBV6-1	A0A0K0K1D8	114 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028		A0A1B0GW15	77 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028		K7EP13	123 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	NPY	P01303	97 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	ZNF80	P51504	273 aa	Predicted RBP	13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	TMEM97	Q5BJF2	176 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	ARPC1A	Q92747	370 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	RNF5	Q99942	180 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	IGF2R	P11717	2491 aa		13.37	□□□□□ -0.27
VPS53-215	ENST00000573028	PRSS57	Q6UWY2	283 aa		13.36	□□□□□ -0.27
VPS53-215	ENST00000573028	CD5L	O43866	347 aa		13.36	□□□□□ -0.27
VPS53-215	ENST00000573028	CEACAM3	P40198	252 aa		13.36	□□□□□ -0.27
VPS53-215	ENST00000573028	PRR25	Q96S07	402 aa		13.36	□□□□□ -0.27
VPS53-215	ENST00000573028	TM4SF20	Q53R12	229 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	FER1L6-AS1	Q8NA97	138 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	CFHR4	Q92496	578 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	RAB37	Q96AX2	223 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	RABAC1	Q9UI14	185 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	AP1S3	Q96PC3	154 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	CST9L	Q9H4G1	147 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	ERCC8	Q13216	396 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	PIP4P2	Q8N4L2	257 aa		13.35	□□□□□ -0.27
VPS53-215	ENST00000573028	IGLV11-55	A0A075B6I3	123 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	RPL7	P18124	248 aa	Known RBP	13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	EVI2A	P22794	236 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	S100A7A	Q86SG5	101 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	DYNAP	Q8N1N2	210 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	SPTAN1	Q13813	2472 aa	Known RBP	13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	GAS8-AS1	O95177	125 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	HBD	P02042	147 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	SRSF8	Q9BRL6	282 aa	Known RBP	13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	IGHV3-49	A0A0A0MS15	119 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028		F8W735	103 aa	Predicted RBP	13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	ZNF493	Q6ZR52	646 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	IFI27L1	Q96BM0	104 aa		13.34	□□□□□ -0.27
VPS53-215	ENST00000573028	PDE6H	Q13956	83 aa		13.33	□□□□□ -0.28
VPS53-215	ENST00000573028	PEF1	Q9UBV8	284 aa	Known RBP	13.33	□□□□□ -0.28
VPS53-215	ENST00000573028	FOXC1	Q12948	553 aa		13.33	□□□□□ -0.28
VPS53-215	ENST00000573028	SAPCD1	Q5SSQ6	148 aa		13.33	□□□□□ -0.28
VPS53-215	ENST00000573028	PCP2	Q8IVA1	136 aa		13.33	□□□□□ -0.28
VPS53-215	ENST00000573028	TIMD4	Q96H15	378 aa		13.33	□□□□□ -0.28
VPS53-215	ENST00000573028	DKK2	Q9UBU2	259 aa		13.33	□□□□□ -0.28
VPS53-215	ENST00000573028	RNF182	Q8N6D2	247 aa		13.32	□□□□□ -0.28
VPS53-215	ENST00000573028	GAGE12B	A1L429	117 aa		13.32	□□□□□ -0.28
VPS53-215	ENST00000573028	TMEM11	P17152	192 aa		13.32	□□□□□ -0.28
VPS53-215	ENST00000573028	CDKN1B	P46527	198 aa		13.32	□□□□□ -0.28
VPS53-215	ENST00000573028	ECSCR	Q19T08	205 aa		13.32	□□□□□ -0.28
VPS53-215	ENST00000573028	ZNF562	Q6V9R5	426 aa		13.32	□□□□□ -0.28
VPS53-215	ENST00000573028	GAGE10	A6NGK3	116 aa		13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 156.3 ms