RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 OR10P1Q8NGE3 313 aa12.06□□□□□ -0.48
CLK3-221ENST00000568139 MCFD2Q8NI22 146 aa12.06□□□□□ -0.48
CLK3-221ENST00000568139 ZNF431Q8TF32 576 aaPredicted RBP12.06□□□□□ -0.48
CLK3-221ENST00000568139 SAT2Q96F10 170 aaPredicted RBP12.06□□□□□ -0.48
CLK3-221ENST00000568139 TRAV12-3A0A0B4J271 114 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 C9orf170A2RU37 121 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 GOSR2O14653 212 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 SIVA1O15304 175 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 CT45A10P0DMU9 189 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 LEPP41159 167 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 PYDC2Q56P42 97 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 CDPF1Q6NVV7 123 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 ZNF546Q86UE3 836 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 PTTG2Q9NZH5 202 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 MGAT4CQ9UBM8 478 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 PXMP4Q9Y6I8 212 aa12.05□□□□□ -0.48
CLK3-221ENST00000568139 LINC00854A0A1B0GVQ3 168 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 H3BTX0 84 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 J3KRW8 73 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 EREGO14944 169 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 AGPAT2O15120 278 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 IGLC2P0DOY2 106 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 FUSP35637 526 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLK3-221ENST00000568139 MORN5Q5VZ52 161 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 TMEM37Q8WXS4 190 aa12.04□□□□□ -0.48
CLK3-221ENST00000568139 NPIPB6E9PJ23 425 aa12.03□□□□□ -0.48
CLK3-221ENST00000568139 OPCMLQ14982 345 aa12.03□□□□□ -0.48
CLK3-221ENST00000568139 C11orf72Q8NBR9 251 aa12.03□□□□□ -0.48
CLK3-221ENST00000568139 V9GYH0 126 aa12.03□□□□□ -0.48
CLK3-221ENST00000568139 TRGV2A0A075B6R0 118 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 H3BQ15 152 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 TSC22D2O75157 780 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 TAS2R30P59541 319 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 ERVFC1-1P60608 527 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 ARL16Q0P5N6 197 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 ZNF680Q8NEM1 530 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 GGACTQ9BVM4 153 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 GSN-AS1Q9NRJ2 163 aa12.02□□□□□ -0.49
CLK3-221ENST00000568139 H3BMQ9 156 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 COX7A2P2O60397 106 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 NXPH4O95158 308 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 Q5VSD8 79 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 C10orf113Q5VZT2 155 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 MGST2Q99735 147 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 LINC00467Q9BRT7 94 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 TNFRSF18Q9Y5U5 241 aa12.01□□□□□ -0.49
CLK3-221ENST00000568139 ZNF324O75467 553 aaPredicted RBP12□□□□□ -0.49
CLK3-221ENST00000568139 SLC25A5P05141 298 aaKnown RBP12□□□□□ -0.49
CLK3-221ENST00000568139 GUK1Q16774 197 aa12□□□□□ -0.49
CLK3-221ENST00000568139 ANXA2RQ3ZCQ2 193 aa12□□□□□ -0.49
CLK3-221ENST00000568139 FRZBQ92765 325 aa12□□□□□ -0.49
CLK3-221ENST00000568139 FUT9Q9Y231 359 aa12□□□□□ -0.49
CLK3-221ENST00000568139 TRGV1A0A0A0MS02 117 aa11.99□□□□□ -0.49
CLK3-221ENST00000568139 C7orf71A4D174 169 aa11.99□□□□□ -0.49
CLK3-221ENST00000568139 SPINK4O60575 86 aa11.99□□□□□ -0.49
CLK3-221ENST00000568139 KRTAP10-1P60331 282 aa11.99□□□□□ -0.49
CLK3-221ENST00000568139 NFE4Q86UQ8 179 aa11.99□□□□□ -0.49
CLK3-221ENST00000568139 DNAJC4Q9NNZ3 241 aa11.99□□□□□ -0.49
CLK3-221ENST00000568139 RCL1Q9Y2P8 373 aaKnown RBP11.99□□□□□ -0.49
CLK3-221ENST00000568139 ICOSQ9Y6W8 199 aa11.99□□□□□ -0.49
CLK3-221ENST00000568139 FAT1Q14517 4588 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 A0A087WTM6 91 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 TRAV5A0A0B4J249 113 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 KLLNB2CW77 178 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 PAX4O43316 350 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 ZNF253O75346 499 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 NDUFB6O95139 128 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 SCGB1D2O95969 90 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 EIF4E3Q8N5X7 224 aaKnown RBP11.98□□□□□ -0.49
CLK3-221ENST00000568139 MRPL53Q96EL3 112 aaKnown RBP11.98□□□□□ -0.49
CLK3-221ENST00000568139 FAM19A4Q96LR4 140 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 KLF12Q9Y4X4 402 aa11.98□□□□□ -0.49
CLK3-221ENST00000568139 FLG2Q5D862 2391 aaPredicted RBP11.97□□□□□ -0.49
CLK3-221ENST00000568139 NOL3O60936 208 aaKnown RBP11.97□□□□□ -0.49
CLK3-221ENST00000568139 IFNA5P01569 189 aa11.97□□□□□ -0.49
CLK3-221ENST00000568139 OR4E1P0C645 316 aa11.97□□□□□ -0.49
CLK3-221ENST00000568139 TCL1AP56279 114 aa11.97□□□□□ -0.49
CLK3-221ENST00000568139 IAH1Q2TAA2 248 aaPredicted RBP11.97□□□□□ -0.49
CLK3-221ENST00000568139 LYPD5Q6UWN5 251 aa11.97□□□□□ -0.49
CLK3-221ENST00000568139 ST6GAL2Q96JF0 529 aa11.97□□□□□ -0.49
CLK3-221ENST00000568139 FLVCR2Q9UPI3 526 aa11.97□□□□□ -0.49
CLK3-221ENST00000568139 C7orf66A4D0T2 115 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 DNAH10OSP0CZ25 163 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 CAMLGP49069 296 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 CD300CQ08708 224 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 ERCC8Q13216 396 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 Q6ZRG5 221 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 LINC00477Q96M19 166 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 PRO0255Q9UI72 69 aa11.96□□□□□ -0.49
CLK3-221ENST00000568139 M0R3E3 92 aa11.95□□□□□ -0.5
CLK3-221ENST00000568139 MBPP02686 304 aaPredicted RBP11.95□□□□□ -0.5
CLK3-221ENST00000568139 SLAQ13239 276 aa11.95□□□□□ -0.5
CLK3-221ENST00000568139 BTN1A1Q13410 526 aa11.95□□□□□ -0.5
CLK3-221ENST00000568139 IBA57Q5T440 356 aaKnown RBP11.95□□□□□ -0.5
CLK3-221ENST00000568139 MIC13Q5XKP0 118 aa11.95□□□□□ -0.5
CLK3-221ENST00000568139 NRARPQ7Z6K4 114 aa11.95□□□□□ -0.5
CLK3-221ENST00000568139 OR1L4Q8NGR5 311 aa11.95□□□□□ -0.5
CLK3-221ENST00000568139 GSKIPQ9P0R6 139 aa11.95□□□□□ -0.5
CLK3-221ENST00000568139 TRBV19A0A075B6N1 114 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 TRAV9-2A0A087WT02 112 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms