RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 DDTP30046 118 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 ARL6IP6Q8N6S5 226 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 SIGLECL1Q8N7X8 197 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 S100A7P31151 101 aa15.65■□□□□ 0.1
CLN3-230ENST00000568076 SRSF1Q07955 248 aaKnown RBP eCLIP15.65■□□□□ 0.1
CLN3-230ENST00000568076 A0A087X0K7 114 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 B4DSR2 109 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 ZNF324O75467 553 aaPredicted RBP15.64■□□□□ 0.09
CLN3-230ENST00000568076 IGF1P05019 195 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 AMTP48728 403 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 VGLL1Q99990 258 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 ZNF462Q96JM2 2506 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 IGHV3OR16-13A0A075B7E8 117 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 IGHV3-74A0A0B4J1X5 117 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 HAX1O00165 279 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 PMCHP20382 165 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 NRN1Q9NPD7 142 aa15.64■□□□□ 0.09
CLN3-230ENST00000568076 FBN2P35556 2912 aa15.63■□□□□ 0.09
CLN3-230ENST00000568076 FAM223BA6NKX1 122 aa15.63■□□□□ 0.09
CLN3-230ENST00000568076 RAB9AP51151 201 aa15.63■□□□□ 0.09
CLN3-230ENST00000568076 COX8CQ7Z4L0 72 aa15.63■□□□□ 0.09
CLN3-230ENST00000568076 FAM223AQ8IWN6 122 aa15.63■□□□□ 0.09
CLN3-230ENST00000568076 Q8TAT8 98 aa15.63■□□□□ 0.09
CLN3-230ENST00000568076 PRR25Q96S07 402 aa15.63■□□□□ 0.09
CLN3-230ENST00000568076 ZNF207O43670 478 aaKnown RBP15.62■□□□□ 0.09
CLN3-230ENST00000568076 TRGV3P03979 118 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 CT45A10P0DMU9 189 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 RELQ04864 619 aaPredicted RBP15.62■□□□□ 0.09
CLN3-230ENST00000568076 LCN12Q6JVE5 192 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 FAM19A2Q8N3H0 131 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 IGHV3-49A0A0A0MS15 119 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 IGHG2P01859 326 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 ARMS2P0C7Q2 107 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 DSCR9P59020 149 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 FAM209BQ5JX69 171 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 NIT1Q86X76 327 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 ZNF843Q8N446 348 aa15.62■□□□□ 0.09
CLN3-230ENST00000568076 SH2D1AO60880 128 aa15.61■□□□□ 0.09
CLN3-230ENST00000568076 PPIFP30405 207 aaKnown RBP15.61■□□□□ 0.09
CLN3-230ENST00000568076 BLCAPP62952 87 aa15.61■□□□□ 0.09
CLN3-230ENST00000568076 DEFA6Q01524 100 aa15.61■□□□□ 0.09
CLN3-230ENST00000568076 Q6ZS46 218 aa15.61■□□□□ 0.09
CLN3-230ENST00000568076 C14orf144Q96I85 54 aa15.61■□□□□ 0.09
CLN3-230ENST00000568076 ATP6V0BQ99437 205 aa15.61■□□□□ 0.09
CLN3-230ENST00000568076 U3KQE9 123 aa15.61■□□□□ 0.09
CLN3-230ENST00000568076 A0A096LNT2 108 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 PRAC2D3DTV9 90 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 ZNF705DP0CH99 300 aaPredicted RBP15.6■□□□□ 0.09
CLN3-230ENST00000568076 ZNF705BP0CI00 300 aaPredicted RBP15.6■□□□□ 0.09
CLN3-230ENST00000568076 RNF182Q8N6D2 247 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 A0A1B0GUT8 65 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 SAPCD1Q5SSQ6 148 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 C1orf194Q5T5A4 169 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 URB1-AS1Q96HZ7 61 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 METTL26Q96S19 204 aa15.6■□□□□ 0.09
CLN3-230ENST00000568076 UBR5O95071 2799 aaPredicted RBP15.59■□□□□ 0.09
CLN3-230ENST00000568076 TRBV12-3P01733 135 aa15.59■□□□□ 0.09
CLN3-230ENST00000568076 SLC25A16P16260 332 aa15.59■□□□□ 0.09
CLN3-230ENST00000568076 ZNF80P51504 273 aaPredicted RBP15.59■□□□□ 0.09
CLN3-230ENST00000568076 Q8N976 141 aa15.59■□□□□ 0.09
CLN3-230ENST00000568076 LOC102724200A0A096LPH7 203 aaPredicted RBP15.58■□□□□ 0.09
CLN3-230ENST00000568076 A1L4Q6 167 aa15.58■□□□□ 0.09
CLN3-230ENST00000568076 TDRG1Q3Y452 100 aa15.58■□□□□ 0.09
CLN3-230ENST00000568076 FAM162BQ5T6X4 162 aa15.58■□□□□ 0.09
CLN3-230ENST00000568076 TEX43Q6ZNM6 134 aa15.58■□□□□ 0.09
CLN3-230ENST00000568076 FBLL1A6NHQ2 334 aaKnown RBP15.58■□□□□ 0.08
CLN3-230ENST00000568076 COX6B1P14854 86 aa15.58■□□□□ 0.08
CLN3-230ENST00000568076 NTF3P20783 257 aa15.58■□□□□ 0.08
CLN3-230ENST00000568076 ARL3P36405 182 aa15.58■□□□□ 0.08
CLN3-230ENST00000568076 KRTDAPP60985 99 aa15.58■□□□□ 0.08
CLN3-230ENST00000568076 ERCC8Q13216 396 aa15.58■□□□□ 0.08
CLN3-230ENST00000568076 TMSB15BA0A087X1C1 80 aa15.57■□□□□ 0.08
CLN3-230ENST00000568076 TRAV8-2A0A0B4J237 113 aa15.57■□□□□ 0.08
CLN3-230ENST00000568076 TMEM189A5PLL7 270 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 M0QZK8 103 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 BRI3O95415 125 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 GATA3P23771 443 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 REC114Q7Z4M0 266 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 SLC50A1Q9BRV3 221 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 TPPP3Q9BW30 176 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 KLK15Q9H2R5 256 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 KIR2DL5BA0A0G2JN68 375 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 KIR2DL5BA0A0G2JPC4 375 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 M0QZ24 198 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 RIGQ13278 110 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 Q6AWC8 147 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 RNASEKQ6P5S7 137 aaKnown RBP15.56■□□□□ 0.08
CLN3-230ENST00000568076 UNQ9165/PRO28630Q6UXU0 137 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 ZNF575Q86XF7 245 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 KIR2DL5AQ8N109 375 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 GATD1Q8NB37 220 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 NDFIP1Q9BT67 221 aa15.56■□□□□ 0.08
CLN3-230ENST00000568076 LINC01356Q8N9X3 169 aa15.55■□□□□ 0.08
CLN3-230ENST00000568076 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.55■□□□□ 0.087e-9■■□□□ 13.5
CLN3-230ENST00000568076 H3BUA1 57 aa15.55■□□□□ 0.08
CLN3-230ENST00000568076 HSBP1O75506 76 aa15.55■□□□□ 0.08
CLN3-230ENST00000568076 C3orf79P0CE67 100 aa15.55■□□□□ 0.08
CLN3-230ENST00000568076 LYZL1Q6UWQ5 148 aa15.55■□□□□ 0.08
CLN3-230ENST00000568076 C8orf86Q6ZUL3 223 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 201.9 ms