RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TMEM41BQ5BJD5 291 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 AKR1C8PQ5T2L2 129 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 IL17DQ8TAD2 202 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 RPUSD4Q96CM3 377 aaKnown RBP12.64□□□□□ -0.39
CLN3-217ENST00000565354 AAMDCQ9H7C9 122 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 CYTL1Q9NRR1 136 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 C1QBP02746 253 aa12.63□□□□□ -0.39
CLN3-217ENST00000565354 NBEAP1P0C6P0 100 aa12.63□□□□□ -0.39
CLN3-217ENST00000565354 EIF5AP63241 154 aaKnown RBP12.63□□□□□ -0.39
CLN3-217ENST00000565354 HIST1H1AQ02539 215 aaPredicted RBP12.63□□□□□ -0.39
CLN3-217ENST00000565354 TMUB2Q71RG4 321 aa12.63□□□□□ -0.39
CLN3-217ENST00000565354 SAT2Q96F10 170 aaPredicted RBP12.63□□□□□ -0.39
CLN3-217ENST00000565354 C1QTNF4Q9BXJ3 329 aa12.63□□□□□ -0.39
CLN3-217ENST00000565354 ACTR3CQ9C0K3 210 aaPredicted RBP12.63□□□□□ -0.39
CLN3-217ENST00000565354 PPP1R14DQ9NXH3 145 aa12.63□□□□□ -0.39
CLN3-217ENST00000565354 TP53TG1Q9Y2A0 90 aa12.63□□□□□ -0.39
CLN3-217ENST00000565354 A0A1B0GVG6 124 aa12.62□□□□□ -0.39
CLN3-217ENST00000565354 HMGB3O15347 200 aaKnown RBP12.62□□□□□ -0.39
CLN3-217ENST00000565354 EIF3GO75821 320 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLN3-217ENST00000565354 PQLC2Q6ZP29 291 aa12.62□□□□□ -0.39
CLN3-217ENST00000565354 HYLS1Q96M11 299 aa12.62□□□□□ -0.39
CLN3-217ENST00000565354 PRELID1Q9Y255 219 aa12.62□□□□□ -0.39
CLN3-217ENST00000565354 ZNF705DP0CH99 300 aaPredicted RBP12.61□□□□□ -0.39
CLN3-217ENST00000565354 ZNF705BP0CI00 300 aaPredicted RBP12.61□□□□□ -0.39
CLN3-217ENST00000565354 FXYD7P58549 80 aa12.61□□□□□ -0.39
CLN3-217ENST00000565354 OR8A1Q8NGG7 326 aa12.61□□□□□ -0.39
CLN3-217ENST00000565354 OR10J6PQ8NGY7 276 aa12.61□□□□□ -0.39
CLN3-217ENST00000565354 RNF183Q96D59 192 aa12.61□□□□□ -0.39
CLN3-217ENST00000565354 FXYD5Q96DB9 178 aa12.61□□□□□ -0.39
CLN3-217ENST00000565354 OVOL2Q9BRP0 275 aa12.61□□□□□ -0.39
CLN3-217ENST00000565354 ZNF705FA8MVS1 300 aaPredicted RBP12.6□□□□□ -0.39
CLN3-217ENST00000565354 PRB4P10163 310 aaPredicted RBP12.6□□□□□ -0.39
CLN3-217ENST00000565354 C4BPBP20851 252 aa12.6□□□□□ -0.39
CLN3-217ENST00000565354 CNN1P51911 297 aaKnown RBP12.6□□□□□ -0.39
CLN3-217ENST00000565354 ZFP69Q49AA0 526 aa12.6□□□□□ -0.39
CLN3-217ENST00000565354 RPP25LQ8N5L8 163 aaKnown RBP12.6□□□□□ -0.39
CLN3-217ENST00000565354 XCL2Q9UBD3 114 aa12.6□□□□□ -0.39
CLN3-217ENST00000565354 AGRNO00468 2067 aa12.6□□□□□ -0.39
CLN3-217ENST00000565354 NDUFB4O95168 129 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 TPT1P13693 172 aaKnown RBP12.59□□□□□ -0.39
CLN3-217ENST00000565354 ICAM4Q14773 271 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 IQCF2Q8IXL9 164 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 EXOC3-AS1Q8N2X6 119 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 RAB24Q969Q5 203 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 MRPL53Q96EL3 112 aaKnown RBP12.59□□□□□ -0.39
CLN3-217ENST00000565354 ZNF503Q96F45 646 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 PHYHIPLQ96FC7 376 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 CLUHP3Q96NS8 147 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 RARRES2Q99969 163 aa12.59□□□□□ -0.39
CLN3-217ENST00000565354 STAG3L2P0CL84 134 aa12.58□□□□□ -0.4
CLN3-217ENST00000565354 STAG3L3P0CL85 134 aa12.58□□□□□ -0.4
CLN3-217ENST00000565354 ARL14EPLP0DKL9 152 aa12.58□□□□□ -0.4
CLN3-217ENST00000565354 CSN1S1P47710 185 aa12.58□□□□□ -0.4
CLN3-217ENST00000565354 RANP62826 216 aaKnown RBP12.58□□□□□ -0.4
CLN3-217ENST00000565354 SLC35B3Q9H1N7 401 aa12.58□□□□□ -0.4
CLN3-217ENST00000565354 CTXND1A0A1B0GTU2 59 aa12.57□□□□□ -0.4
CLN3-217ENST00000565354 M0R3E3 92 aa12.57□□□□□ -0.4
CLN3-217ENST00000565354 CXorf1O96002 111 aa12.57□□□□□ -0.4
CLN3-217ENST00000565354 LGALSLQ3ZCW2 172 aaPredicted RBP12.57□□□□□ -0.4
CLN3-217ENST00000565354 FAM74A1Q5RGS3 127 aa12.57□□□□□ -0.4
CLN3-217ENST00000565354 LYPD1Q8N2G4 141 aa12.57□□□□□ -0.4
CLN3-217ENST00000565354 OR11H2Q8NH07 326 aa12.57□□□□□ -0.4
CLN3-217ENST00000565354 Q9H3A6 140 aa12.57□□□□□ -0.4
CLN3-217ENST00000565354 KMT2AQ03164 3969 aa12.56□□□□□ -0.4
CLN3-217ENST00000565354 PRAC2D3DTV9 90 aa12.56□□□□□ -0.4
CLN3-217ENST00000565354 AMBPP02760 352 aa12.56□□□□□ -0.4
CLN3-217ENST00000565354 SEC11BP0C7V7 166 aa12.56□□□□□ -0.4
CLN3-217ENST00000565354 CD300CQ08708 224 aa12.56□□□□□ -0.4
CLN3-217ENST00000565354 BAP18Q8IXM2 172 aa12.56□□□□□ -0.4
CLN3-217ENST00000565354 HERC2O95714 4834 aa12.56□□□□□ -0.4
CLN3-217ENST00000565354 BOLA2-SMG1P6H3BVE0 249 aa12.55□□□□□ -0.4
CLN3-217ENST00000565354 GIG44P09565 113 aaPredicted RBP12.55□□□□□ -0.4
CLN3-217ENST00000565354 GCHFRP30047 84 aa12.55□□□□□ -0.4
CLN3-217ENST00000565354 SPINK13Q1W4C9 94 aa12.55□□□□□ -0.4
CLN3-217ENST00000565354 CMTM2Q8TAZ6 248 aa12.55□□□□□ -0.4
CLN3-217ENST00000565354 LINC00476Q8WZB0 136 aa12.55□□□□□ -0.4
CLN3-217ENST00000565354 TMEM167BQ9NRX6 74 aa12.55□□□□□ -0.4
CLN3-217ENST00000565354 GOLT1BQ9Y3E0 138 aa12.55□□□□□ -0.4
CLN3-217ENST00000565354 IGHV3OR16-12A0A075B7B8 117 aa12.54□□□□□ -0.4
CLN3-217ENST00000565354 A8MTW9 85 aa12.54□□□□□ -0.4
CLN3-217ENST00000565354 UMAD1C9J7I0 102 aa12.54□□□□□ -0.4
CLN3-217ENST00000565354 M0R2Z0 102 aa12.54□□□□□ -0.4
CLN3-217ENST00000565354 EIF5AL1Q6IS14 154 aaKnown RBP12.54□□□□□ -0.4
CLN3-217ENST00000565354 AMTNQ6UX39 209 aa12.54□□□□□ -0.4
CLN3-217ENST00000565354 PGPA6NDG6 321 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 INSP01308 110 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 TSPOP30536 169 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 SSX7Q7RTT5 188 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 STOML3Q8TAV4 291 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 FAM213BQ8TBF2 198 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 RXFP4Q8TDU9 374 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 TMED6Q8WW62 240 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 TMEM208Q9BTX3 173 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 OTORQ9NRC9 128 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 RPH3ALQ9UNE2 315 aa12.53□□□□□ -0.4
CLN3-217ENST00000565354 IGKV2-40A0A087WW87 121 aaPredicted RBP12.52□□□□□ -0.41
CLN3-217ENST00000565354 A0A0J9YWU9 116 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 MAP1LC3B2A6NCE7 125 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 NPIPB6E9PJ23 425 aa12.52□□□□□ -0.41
CLN3-217ENST00000565354 IGKV2D-40P01614 121 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms