RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PARD6GQ9BYG4 376 aaPredicted RBP11.92□□□□□ -0.5
CLN3-216ENST00000565316 C20orf85Q9H1P6 137 aa11.92□□□□□ -0.5
CLN3-216ENST00000565316 L7N2F9 121 aa11.91□□□□□ -0.5
CLN3-216ENST00000565316 CCSO14618 274 aa11.91□□□□□ -0.5
CLN3-216ENST00000565316 VAMP2P63027 116 aa11.91□□□□□ -0.5
CLN3-216ENST00000565316 RAB31Q13636 194 aa11.91□□□□□ -0.5
CLN3-216ENST00000565316 GUK1Q16774 197 aa11.91□□□□□ -0.5
CLN3-216ENST00000565316 SSX7Q7RTT5 188 aa11.91□□□□□ -0.5
CLN3-216ENST00000565316 NPIPB6E9PJ23 425 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 CT45A10P0DMU9 189 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 CLINT1Q14677 625 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 ZNF846Q147U1 533 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 VWC2Q2TAL6 325 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 MIC13Q5XKP0 118 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 Q6ZRG5 221 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 NRARPQ7Z6K4 114 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 CCDC28AQ8IWP9 274 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 RXFP4Q8TDU9 374 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 KRTAP4-5Q9BYR2 181 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 WDR83OSQ9Y284 106 aa11.9□□□□□ -0.5
CLN3-216ENST00000565316 TRAV5A0A0B4J249 113 aa11.89□□□□□ -0.51
CLN3-216ENST00000565316 ZNF253O75346 499 aa11.89□□□□□ -0.51
CLN3-216ENST00000565316 M6PRP20645 277 aa11.89□□□□□ -0.51
CLN3-216ENST00000565316 OR5I1Q13606 314 aa11.89□□□□□ -0.51
CLN3-216ENST00000565316 OR1L4Q8NGR5 311 aa11.89□□□□□ -0.51
CLN3-216ENST00000565316 CHAC2Q8WUX2 184 aa11.89□□□□□ -0.51
CLN3-216ENST00000565316 GNPNAT1Q96EK6 184 aaPredicted RBP11.89□□□□□ -0.51
CLN3-216ENST00000565316 UQCC1Q9NVA1 299 aa11.89□□□□□ -0.51
CLN3-216ENST00000565316 LSM5Q9Y4Y9 91 aaKnown RBP11.89□□□□□ -0.51
CLN3-216ENST00000565316 TRAV26-1A0A087WT03 109 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 LYRM1O43325 122 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 CDK2AP2O75956 126 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 CST7O76096 145 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 TCRBP04435 133 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 HOXA5P20719 270 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 LEPP41159 167 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 RPL29P47914 159 aaKnown RBP11.88□□□□□ -0.51
CLN3-216ENST00000565316 BCAP31P51572 246 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 CAV2P51636 162 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 ZNF431Q8TF32 576 aaPredicted RBP11.88□□□□□ -0.51
CLN3-216ENST00000565316 Q9H8V8 135 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 ZNF586Q9NXT0 402 aa11.88□□□□□ -0.51
CLN3-216ENST00000565316 APOBP04114 4563 aaKnown RBP11.88□□□□□ -0.51
CLN3-216ENST00000565316 FAM24AA6NFZ4 105 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 FAM25EA8MYX2 175 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 C16orf90A8MZG2 172 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 H3BNG1 76 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 RLN2P04090 185 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 DAZ2Q13117 558 aaKnown RBP11.87□□□□□ -0.51
CLN3-216ENST00000565316 IL15RAQ13261 267 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 MRPL53Q96EL3 112 aaKnown RBP11.87□□□□□ -0.51
CLN3-216ENST00000565316 C2orf50Q96LR7 162 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 PFDN5Q99471 154 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 PYGO2Q9BRQ0 406 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 UPK3BQ9BT76 320 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 SLC39A9Q9NUM3 307 aa11.87□□□□□ -0.51
CLN3-216ENST00000565316 TRBV19A0A075B6N1 114 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 TRAV12-3A0A0B4J271 114 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 GAGE12BA1L429 117 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 C5orf51A6NDU8 294 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 SNURFLB1AK76 121 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 GAGE7O76087 117 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 GAGE12FP0CL80 117 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 GAGE12GP0CL81 117 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 GAGE12IP0CL82 117 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 SULT1A1P50225 295 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 SEC22CQ9BRL7 303 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 KRTAP1-5Q9BYS1 174 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 LYRM2Q9NU23 88 aaPredicted RBP11.86□□□□□ -0.51
CLN3-216ENST00000565316 TMEM14CQ9P0S9 112 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 TRAV6A0A075B6T7 132 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 PVALBP20472 110 aaPredicted RBP11.86□□□□□ -0.51
CLN3-216ENST00000565316 S100A11P31949 105 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 ESRGQ1W209 222 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 C12orf45Q8N5I9 185 aaPredicted RBP11.86□□□□□ -0.51
CLN3-216ENST00000565316 Q9H3A6 140 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 NUDT15Q9NV35 164 aa11.86□□□□□ -0.51
CLN3-216ENST00000565316 A0A0J9YY99 117 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 IGSF23A1L1A6 192 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 J3KRW8 73 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 NDUFB4O95168 129 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 SLC25A5P05141 298 aaKnown RBP11.85□□□□□ -0.51
CLN3-216ENST00000565316 TTC32Q5I0X7 151 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 Q6ZTI0 123 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 TMEM252Q8N6L7 170 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 FAM19A4Q96LR4 140 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 C18orf15Q96N68 181 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 LINC00467Q9BRT7 94 aa11.85□□□□□ -0.51
CLN3-216ENST00000565316 UBE2L5PA0A1B0GUS4 154 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 A0A1W2PPQ1 181 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 KLLNB2CW77 178 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 M0R3E3 92 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 ZNF324O75467 553 aaPredicted RBP11.84□□□□□ -0.51
CLN3-216ENST00000565316 PDE6HQ13956 83 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 C11orf72Q8NBR9 251 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 LINC00477Q96M19 166 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 TMPRSS5Q9H3S3 457 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 PRELID1Q9Y255 219 aa11.84□□□□□ -0.51
CLN3-216ENST00000565316 MRPS16Q9Y3D3 137 aaKnown RBP11.84□□□□□ -0.51
CLN3-216ENST00000565316 C7orf71A4D174 169 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms