RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TMEM256Q8N2U0 113 aa7.63□□□□□ -1.19
VPS39-208ENST00000564994 OR1L4Q8NGR5 311 aa7.63□□□□□ -1.19
VPS39-208ENST00000564994 S100ZQ8WXG8 99 aa7.63□□□□□ -1.19
VPS39-208ENST00000564994 ZNF586Q9NXT0 402 aa7.63□□□□□ -1.19
VPS39-208ENST00000564994 IGLV2-18A0A075B6J9 118 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 A6NHS1 94 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 RTL8CO15255 209 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 UPK1BO75841 260 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 HTN1P15515 57 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 GFI1BQ5VTD9 330 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 STX12Q86Y82 276 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 UBE2DNLQ8IWF7 75 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 RNASE8Q8TDE3 154 aaKnown RBP7.62□□□□□ -1.19
VPS39-208ENST00000564994 CHAC2Q8WUX2 184 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 PFDN5Q99471 154 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 GPN1Q9HCN4 374 aaPredicted RBP7.62□□□□□ -1.19
VPS39-208ENST00000564994 PXMP4Q9Y6I8 212 aa7.62□□□□□ -1.19
VPS39-208ENST00000564994 A0A1B0GVY2 172 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 H0YIZ8 118 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 CT45A10P0DMU9 189 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 FGF7P21781 194 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 HBG1P69891 147 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 HBG2P69892 147 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 NHLH2Q02577 135 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 GUK1Q16774 197 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 ATP6V1FQ16864 119 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 LGALS9BQ3B8N2 356 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 GCSAMLQ5JQS6 135 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 Q6ZR54 194 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 LINC00336Q6ZUF6 198 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 OR10J6PQ8NGY7 276 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 ENKURQ8TC29 256 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 C16orf74Q96GX8 76 aa7.61□□□□□ -1.19
VPS39-208ENST00000564994 TRBV19A0A075B6N1 114 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 NPIPB6E9PJ23 425 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 H7BYZ3 331 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 J3KRW8 73 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 M0R3E3 92 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 ZNF253O75346 499 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 NDUFB4O95168 129 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 PYYP10082 97 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 RNF212Q495C1 297 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 THAP6Q8TBB0 222 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 TMEM263Q8WUH6 116 aaKnown RBP7.6□□□□□ -1.19
VPS39-208ENST00000564994 C20orf144Q9BQM9 153 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 NPCDR1Q9BY65 106 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 NOP10Q9NPE3 64 aaKnown RBP7.6□□□□□ -1.19
VPS39-208ENST00000564994 OR5AC2Q9NZP5 309 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 TMEM14CQ9P0S9 112 aa7.6□□□□□ -1.19
VPS39-208ENST00000564994 TIMM8BQ9Y5J9 83 aaPredicted RBP7.6□□□□□ -1.19
VPS39-208ENST00000564994 CBY3A6NI87 242 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 F5H768 121 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 MPDU1O75352 247 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 ATP5G1P05496 136 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 ATP5G3P48201 142 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 LRRC37A5PQ49AS3 106 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 ZNF493Q6ZR52 646 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 C15orf53Q8NAA6 179 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 OR5C1Q8NGR4 320 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 ODF3Q96PU9 254 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 NMES1Q9C002 83 aa7.59□□□□□ -1.19
VPS39-208ENST00000564994 TRAV12-3A0A0B4J271 114 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 PRSS29PA6NIE9 313 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 E5RGE8 158 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 INMT-MINDY4F8WBC2 141 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 HIST1H1EP10412 219 aaKnown RBP7.58□□□□□ -1.2
VPS39-208ENST00000564994 H2BFSP57053 126 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 ERCC8Q13216 396 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 CLINT1Q14677 625 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 MIR17HGQ75NE6 70 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 EXOC3-AS1Q8N2X6 119 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 LINC00612Q8N6U2 182 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 MRPL53Q96EL3 112 aaKnown RBP7.58□□□□□ -1.2
VPS39-208ENST00000564994 FAM167A-AS1Q96KT0 104 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 SLC25A2Q9BXI2 301 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 PTTG2Q9NZH5 202 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 RYR1P21817 5038 aa7.58□□□□□ -1.2
VPS39-208ENST00000564994 PRAF2O60831 178 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 NUDT3O95989 172 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 RLN2P04090 185 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 LEPP41159 167 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 BLNKQ8WV28 456 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 RNF141Q8WVD5 230 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 FAM19A4Q96LR4 140 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 MARVELD1Q9BSK0 173 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 SLC25A31Q9H0C2 315 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 AGPAT4-IT1Q9H0P7 198 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 LRP1BQ9NZR2 4599 aa7.57□□□□□ -1.2
VPS39-208ENST00000564994 PCLOQ9Y6V0 5065 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 MUC4Q99102 2169 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 HOXA5P20719 270 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 PDE6HQ13956 83 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 CCDC28AQ8IWP9 274 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 ZNRF2Q8NHG8 242 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 PPP1R1CQ8WVI7 109 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 KRTAP17-1Q9BYP8 105 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 WDR61Q9GZS3 305 aaKnown RBP7.56□□□□□ -1.2
VPS39-208ENST00000564994 PRELID1Q9Y255 219 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 TIMM9Q9Y5J7 89 aa7.56□□□□□ -1.2
VPS39-208ENST00000564994 IGKV2-40A0A087WW87 121 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms