RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 WIPF1O43516 503 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 FOLR2P14207 255 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 RAB5AP20339 215 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 RPEL1Q2QD12 228 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 C16orf54Q6UWD8 224 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 SIGLEC15Q6ZMC9 328 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 RNF152Q8N8N0 203 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 IGF2BP2-AS1Q96M15 143 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 LINC00479Q96M42 142 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 C17orf77Q96MU5 243 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 SLC50A1Q9BRV3 221 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 OSTCQ9NRP0 149 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 ZFP30Q9Y2G7 519 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 SMAD5-AS1Q9Y6J3 95 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 URGCP-MRPS24S4R325 110 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 TRRAPQ9Y4A5 3859 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 TRBV24-1A0A075B6N3 115 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 TRAV34A0A0B4J273 112 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 DIRC3C9JPN6 131 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 ZNF207O43670 478 aaKnown RBP6.83□□□□□ -1.32
VPS39-207ENST00000563692 TRBV12-3P01733 135 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 RPLP1P05386 114 aaKnown RBP6.83□□□□□ -1.32
VPS39-207ENST00000563692 PFN1P07737 140 aaKnown RBP6.83□□□□□ -1.32
VPS39-207ENST00000563692 LGALS1P09382 135 aaKnown RBP6.83□□□□□ -1.32
VPS39-207ENST00000563692 RPS10P46783 165 aaKnown RBP6.83□□□□□ -1.32
VPS39-207ENST00000563692 RAB5BP61020 215 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 LCNL1Q6ZST4 164 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 GOLT1AQ6ZVE7 132 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 TMEM75Q8N9X5 138 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 DAZAP1Q96EP5 407 aaKnown RBP6.83□□□□□ -1.32
VPS39-207ENST00000563692 FAM210BQ96KR6 192 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 YPEL4Q96NS1 127 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 SERTAD4Q9NUC0 356 aa6.83□□□□□ -1.32
VPS39-207ENST00000563692 TRAV9-1A0A075B6T8 112 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 IGHV3-66A0A0C4DH42 116 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 IGHV7-4-1A0A0J9YVY3 117 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 K7EN84 100 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 LTAP01374 205 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 APOHP02749 345 aaPredicted RBP6.82□□□□□ -1.32
VPS39-207ENST00000563692 OR5I1Q13606 314 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 PSG3Q16557 428 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 NSUN5P1Q3KNT7 163 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 SAPCD1Q5SSQ6 148 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 IBA57Q5T440 356 aaKnown RBP6.82□□□□□ -1.32
VPS39-207ENST00000563692 SAMD13Q5VXD3 122 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 UNQ9165/PRO28630Q6UXU0 137 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 FAM231DQ6ZW35 169 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 PRNTQ86SH4 94 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 NDUFA11Q86Y39 141 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 TMEM183AQ8IXX5 376 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 MYOZ3Q8TDC0 251 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 ZNF331Q9NQX6 463 aaPredicted RBP6.82□□□□□ -1.32
VPS39-207ENST00000563692 DAZ1Q9NQZ3 744 aaKnown RBP6.82□□□□□ -1.32
VPS39-207ENST00000563692 IL36BQ9NZH7 164 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 SMPXQ9UHP9 88 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 PSG8Q9UQ74 426 aa6.82□□□□□ -1.32
VPS39-207ENST00000563692 IGHV3OR16-13A0A075B7E8 117 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 IGHV3-49A0A0A0MS15 119 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 TGIF2-C20orf24A0A0A6YYL0 155 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 IGHV3-74A0A0B4J1X5 117 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 ZNF705GA8MUZ8 300 aaPredicted RBP6.81□□□□□ -1.32
VPS39-207ENST00000563692 LGALS9O00182 355 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 SLC17A3O00476 420 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 GATCO43716 136 aaKnown RBP6.81□□□□□ -1.32
VPS39-207ENST00000563692 IGLV2-8P01709 118 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 CDX1P47902 265 aaPredicted RBP6.81□□□□□ -1.32
VPS39-207ENST00000563692 RPL11P62913 178 aaKnown RBP6.81□□□□□ -1.32
VPS39-207ENST00000563692 FLI1Q01543 452 aaPredicted RBP6.81□□□□□ -1.32
VPS39-207ENST00000563692 LCN12Q6JVE5 192 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 C10orf99Q6UWK7 81 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 C1QL4Q86Z23 238 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 DPF1Q92782 380 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 MRPL53Q96EL3 112 aaKnown RBP6.81□□□□□ -1.32
VPS39-207ENST00000563692 C16orf92Q96LL3 132 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 PYGO2Q9BRQ0 406 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 MLST8Q9BVC4 326 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 RHPN1-AS1Q9BWJ2 59 aa6.81□□□□□ -1.32
VPS39-207ENST00000563692 A0A1W2PPQ1 181 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 RBAKDNA6NC62 111 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 CHEK1O14757 476 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 CXCL1P09341 107 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 CD28P10747 220 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 FAM3BP58499 235 aaPredicted RBP6.8□□□□□ -1.32
VPS39-207ENST00000563692 TM4SF20Q53R12 229 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 KHDC1LQ5JSQ8 128 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 REC114Q7Z4M0 266 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 NHLRC2Q8NBF2 726 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 NUDT10Q8NFP7 164 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 GLMPQ8WWB7 406 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 NUDT11Q96G61 164 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 SGK494Q96LW2 274 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 CITED2Q99967 270 aaPredicted RBP6.8□□□□□ -1.32
VPS39-207ENST00000563692 NDFIP1Q9BT67 221 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 RNASE7Q9H1E1 156 aaKnown RBP6.8□□□□□ -1.32
VPS39-207ENST00000563692 SRD5A3Q9H8P0 318 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 ZNF492Q9P255 531 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 V9GYV3 84 aa6.8□□□□□ -1.32
VPS39-207ENST00000563692 LINC01619G3V211 115 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 M0R3E3 92 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 254.9 ms