RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 BSPH1Q075Z2 132 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 CEND1Q8N111 149 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 DEFB108BQ8NET1 73 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 NUP37Q8NFH4 326 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 A0A1B0GW15 77 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 HAX1O00165 279 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 PLAUP00749 431 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 SLC25A5P05141 298 aaKnown RBP10.56□□□□□ -0.72
CLK3-206ENST00000562078 THBDP07204 575 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 CT83Q5H943 113 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 PRELID3AQ96N28 172 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 USP24Q9UPU5 2620 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 hADV38S2A0JD32 116 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 PRSS29PA6NIE9 313 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 Q71RC1 249 aaPredicted RBP10.56□□□□□ -0.72
CLK3-206ENST00000562078 DAZAP1Q96EP5 407 aaKnown RBP10.56□□□□□ -0.72
CLK3-206ENST00000562078 EPDR1Q9UM22 224 aa10.56□□□□□ -0.72
CLK3-206ENST00000562078 RELNP78509 3460 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 TRBV25-1A0A075B6N4 114 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 ARMS2P0C7Q2 107 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 CCL8P80075 99 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 SSBP2P81877 361 aaPredicted RBP10.55□□□□□ -0.72
CLK3-206ENST00000562078 ZCCHC24Q8N2G6 241 aaKnown RBP10.55□□□□□ -0.72
CLK3-206ENST00000562078 LEAP2Q969E1 77 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 GFRA4Q9GZZ7 299 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 CALYQ9NYX4 217 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 HIGD1BQ9P298 99 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 IGSF10Q6WRI0 2623 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 OVOL3O00110 214 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 LOXL3P58215 753 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 HSPE1P61604 102 aaKnown RBP10.55□□□□□ -0.72
CLK3-206ENST00000562078 ADIPOQQ15848 244 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 UTF1Q5T230 341 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 Q6AWC8 147 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 LCNL1Q6ZST4 164 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 FXYD5Q96DB9 178 aa10.55□□□□□ -0.72
CLK3-206ENST00000562078 MRPL32Q9BYC8 188 aaKnown RBP10.55□□□□□ -0.72
CLK3-206ENST00000562078 AGRNO00468 2067 aa10.54□□□□□ -0.72
CLK3-206ENST00000562078 NHLRC4P0CG21 123 aaPredicted RBP10.54□□□□□ -0.72
CLK3-206ENST00000562078 C12orf74Q32Q52 190 aa10.54□□□□□ -0.72
CLK3-206ENST00000562078 FAM216BQ8N7L0 139 aa10.54□□□□□ -0.72
CLK3-206ENST00000562078 IFI27L1Q96BM0 104 aa10.54□□□□□ -0.72
CLK3-206ENST00000562078 PGPA6NDG6 321 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 NPIPB5A8MRT5 1133 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 MYCNOSP40205 109 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 SMCPP49901 116 aaPredicted RBP10.53□□□□□ -0.72
CLK3-206ENST00000562078 ZNF134P52741 427 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 ADORA2A-AS1P86434 159 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 GAFA1Q96PS6 74 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 S1PR3Q99500 378 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 CCL13Q99616 98 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 TNFRSF18Q9Y5U5 241 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 ZNF562Q6V9R5 426 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 C1orf229Q6ZS94 237 aaPredicted RBP10.53□□□□□ -0.72
CLK3-206ENST00000562078 OR5AN1Q8NGI8 311 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 IFI27L2Q9H2X8 130 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 TMEM14BQ9NUH8 114 aa10.53□□□□□ -0.72
CLK3-206ENST00000562078 COL8A1P27658 744 aa10.52□□□□□ -0.72
CLK3-206ENST00000562078 C17orf58Q2M2W7 97 aa10.52□□□□□ -0.72
CLK3-206ENST00000562078 CIARTQ8N365 385 aaPredicted RBP10.52□□□□□ -0.72
CLK3-206ENST00000562078 CITED1Q99966 193 aa10.52□□□□□ -0.72
CLK3-206ENST00000562078 KLF12Q9Y4X4 402 aa10.52□□□□□ -0.72
CLK3-206ENST00000562078 CACNA1BQ00975 2339 aa10.52□□□□□ -0.73
CLK3-206ENST00000562078 H3BTX0 84 aa10.52□□□□□ -0.73
CLK3-206ENST00000562078 COX7A2P2O60397 106 aa10.52□□□□□ -0.73
CLK3-206ENST00000562078 RBP4P02753 201 aa10.52□□□□□ -0.73
CLK3-206ENST00000562078 PATE2Q6UY27 113 aa10.52□□□□□ -0.73
CLK3-206ENST00000562078 ZNF492Q9P255 531 aa10.52□□□□□ -0.73
CLK3-206ENST00000562078 FOXA2Q9Y261 457 aaPredicted RBP10.52□□□□□ -0.73
CLK3-206ENST00000562078 ANKHD1Q8IWZ3 2542 aaKnown RBP10.52□□□□□ -0.73
CLK3-206ENST00000562078 A0A1B0GUT8 65 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 WI2-2373I1.2A0A1W2PRP0 233 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 LINC01548A6NM66 108 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 C17orf100A8MU93 164 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 D6R8Y8 96 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 NDUFS7O75251 213 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 CGB3P0DN86 165 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 CGB7P0DN87 165 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 RRN3P1Q2M238 152 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 C10orf113Q5VZT2 155 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 PDPNQ86YL7 162 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 PTH2Q96A98 100 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 TRAV8-1A0A0A6YYK1 113 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 HBDP02042 147 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 CT45A10P0DMU9 189 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 RNASE6Q93091 150 aaKnown RBP10.51□□□□□ -0.73
CLK3-206ENST00000562078 TPPP3Q9BW30 176 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 NGBQ9NPG2 151 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 HHLA3Q9XRX5 114 aa10.51□□□□□ -0.73
CLK3-206ENST00000562078 LRBAP50851 2863 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 CCDC179H3BU77 68 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 TNFRSF1AP19438 455 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 DIAPH2-AS1Q14236 149 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 CFAP126Q5VTH2 177 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 ZFAND6Q6FIF0 208 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 GTSCR1Q86UQ5 136 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 IGHV3-48P01763 117 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 GNLYP22749 145 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 OR10X1Q8NGY0 326 aa10.5□□□□□ -0.73
CLK3-206ENST00000562078 GRNP28799 593 aaKnown RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms