RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 CHAC1Q9BUX1 264 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 FAM223BA6NKX1 122 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 FAM223AQ8IWN6 122 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 BMPERQ8N8U9 685 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 MPV17L2Q567V2 206 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 TMEM170AQ8WVE7 144 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 E9PLN8 166 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 C4orf48Q5BLP8 95 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 RNASE13Q5GAN3 156 aaKnown RBP5.63□□□□□ -1.51
SYNE2-216ENST00000555002 NEGR1Q7Z3B1 354 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 TM2D1Q9BX74 207 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 OSTCQ9NRP0 149 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 RBM38Q9H0Z9 239 aaKnown RBP5.63□□□□□ -1.51
SYNE2-216ENST00000555002 PLXNB3Q9ULL4 1909 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 PPP1R3EQ9H7J1 279 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 MGAMO43451 1857 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 ZNF883P0CG24 379 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 XCL1P47992 114 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 TMEM105Q8N8V8 129 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 WFDC9Q8NEX5 89 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 SPANXA1Q9NS26 97 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 COL11A2P13942 1736 aaPredicted RBP5.63□□□□□ -1.51
SYNE2-216ENST00000555002 TRAV12-2A0A075B6T6 113 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 OVOL3O00110 214 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 CRYGCP07315 174 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 IGHV1-8P0DP01 117 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 TIMP3P35625 211 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 C8orf31Q8N9H6 132 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 ZNF503Q96F45 646 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 SHISA9B4DS77 424 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 PRSS57Q6UWY2 283 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 TRGV9Q99603 122 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 GLI3P10071 1580 aa5.63□□□□□ -1.51
SYNE2-216ENST00000555002 RSPO3Q9BXY4 272 aaPredicted RBP5.62□□□□□ -1.51
SYNE2-216ENST00000555002 F8P00451 2351 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 UBL5Q9BZL1 73 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 TRBV5-3A0A0A0MS03 114 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 UNQ6494/PRO21346Q6UXR6 183 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 IGFBP3P17936 291 aaPredicted RBP5.62□□□□□ -1.51
SYNE2-216ENST00000555002 WFDC1Q9HC57 220 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 TMEM131Q92545 1883 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 ETDCA0A1B0GVM5 59 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 C8orf49Q96NF6 230 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 A0A1W2PR77 199 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 SP5Q6BEB4 398 aaPredicted RBP5.62□□□□□ -1.51
SYNE2-216ENST00000555002 TRPT1Q86TN4 253 aaKnown RBP5.62□□□□□ -1.51
SYNE2-216ENST00000555002 C14orf132Q9NPU4 83 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 NEUROG3Q9Y4Z2 214 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 EML5Q05BV3 1969 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 IGKV1D-43A0A0B4J1Z2 117 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 TMEM178BH3BS89 294 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 IGKV1-39P01597 117 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 IGKV1D-39P04432 117 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 TP53TG1Q9Y2A0 90 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 PSG3Q16557 428 aa5.62□□□□□ -1.51
SYNE2-216ENST00000555002 FNDC1Q4ZHG4 1894 aaPredicted RBP5.62□□□□□ -1.51
SYNE2-216ENST00000555002 MAJINQ3KP22 176 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 MINOS1Q5TGZ0 78 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 MINOS1-NBL1R4GNA1 71 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 A0A087WWC5 75 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 TRAV3A0A0B4J244 114 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 VSIRQ9H7M9 311 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 C9orf139Q6ZV77 190 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 OBSL1O75147 1896 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 NHSL1Q5SYE7 1610 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 SAA4P35542 130 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 DAZ1Q9NQZ3 744 aaKnown RBP5.61□□□□□ -1.51
SYNE2-216ENST00000555002 A0A0G2JNJ9 132 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 Q9UFV3 132 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 TRBV6-7A0A0A0MS04 114 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 FGFBP3Q8TAT2 258 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 AMN1Q8IY45 258 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 NUP35Q8NFH5 326 aa5.61□□□□□ -1.51
SYNE2-216ENST00000555002 UBE2AP49459 152 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 SRSF3P84103 164 aaKnown RBP5.6□□□□□ -1.51
SYNE2-216ENST00000555002 ZFHX2Q9C0A1 2572 aaPredicted RBP5.6□□□□□ -1.51
SYNE2-216ENST00000555002 LYZL4Q96KX0 146 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 SPATA25Q9BR10 227 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 BPESC1Q9GZL8 116 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 C2CD3Q4AC94 2353 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 TRAV26-2A0A0B4J265 109 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 COL8A2P25067 703 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 ANKRD39Q53RE8 183 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 NHLRC3Q5JS37 347 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 WBP1Q96G27 269 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 I3L3M4 83 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 F8W735 103 aaPredicted RBP5.6□□□□□ -1.51
SYNE2-216ENST00000555002 MST1LQ2TV78 715 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 RPRMLQ8N4K4 120 aa5.6□□□□□ -1.51
SYNE2-216ENST00000555002 PAQR4Q8N4S7 273 aaPredicted RBP5.6□□□□□ -1.51
SYNE2-216ENST00000555002 LRCOL1A6NCL2 159 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 M0R1W7 72 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 BUB1B-PAK6H3BSN5 160 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 IGHV3-30P01768 117 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 IGHV3-33P01772 117 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 IGHV3-30-3P0DP02 117 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 IGHV3-30-5P0DP03 117 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 H0YJW9 148 aa5.59□□□□□ -1.51
SYNE2-216ENST00000555002 MRPL14Q6P1L8 145 aaKnown RBP5.59□□□□□ -1.51
SYNE2-216ENST00000555002 A0A1B0GWJ7 208 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 1302.3 ms