RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 GFRALQ6UXV0 394 aa13.75□□□□□ -0.21
SYNE3-202ENST00000553340 CNOT1A5YKK6 2376 aaKnown RBP13.74□□□□□ -0.21
SYNE3-202ENST00000553340 IGKV2-40A0A087WW87 121 aaPredicted RBP13.74□□□□□ -0.21
SYNE3-202ENST00000553340 B9A039 149 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 LYNX1G3V0Z9 82 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 IGKV2D-40P01614 121 aaPredicted RBP13.74□□□□□ -0.21
SYNE3-202ENST00000553340 LYNX1P0DP58 116 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 MFAP4P55083 255 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 ADAMTSL5Q6ZMM2 481 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 FER1L6-AS1Q8NA97 138 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 PRR25Q96S07 402 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 HILPDAQ9Y5L2 63 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 EP300Q09472 2414 aaPredicted RBP13.74□□□□□ -0.21
SYNE3-202ENST00000553340 A0A0G2JLM5 398 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 JMJD8Q96S16 334 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 CSTL1Q9H114 145 aa13.74□□□□□ -0.21
SYNE3-202ENST00000553340 FBLL1A6NHQ2 334 aaKnown RBP13.73□□□□□ -0.21
SYNE3-202ENST00000553340 SMKR1H3BMG3 65 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 K7EP34 96 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 NDUFS7O75251 213 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 EGR2P11161 476 aaPredicted RBP13.73□□□□□ -0.21
SYNE3-202ENST00000553340 BMI1P35226 326 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 NMUP48645 174 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 MEGF9Q9H1U4 602 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 PCNX1Q96RV3 2341 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 ONECUT1Q9UBC0 465 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 CACNA1HO95180 2353 aa13.73□□□□□ -0.21
SYNE3-202ENST00000553340 RPL7P18124 248 aaKnown RBP13.72□□□□□ -0.21
SYNE3-202ENST00000553340 ZNF48Q96MX3 618 aaPredicted RBP13.72□□□□□ -0.21
SYNE3-202ENST00000553340 NPFFR1Q9GZQ6 430 aa13.72□□□□□ -0.21
SYNE3-202ENST00000553340 A0A1W2PRD5 423 aa13.72□□□□□ -0.21
SYNE3-202ENST00000553340 A0A1W2PRF3 423 aa13.72□□□□□ -0.21
SYNE3-202ENST00000553340 A0A1W2PRM7 423 aa13.72□□□□□ -0.21
SYNE3-202ENST00000553340 PCP2Q8IVA1 136 aa13.72□□□□□ -0.21
SYNE3-202ENST00000553340 OR2K2Q8NGT1 345 aa13.72□□□□□ -0.21
SYNE3-202ENST00000553340 OTOGLQ3ZCN5 2332 aa13.71□□□□□ -0.21
SYNE3-202ENST00000553340 SAP30O75446 220 aa13.71□□□□□ -0.21
SYNE3-202ENST00000553340 IGLV11-55A0A075B6I3 123 aa13.71□□□□□ -0.22
SYNE3-202ENST00000553340 IGLC6P0CF74 106 aa13.71□□□□□ -0.22
SYNE3-202ENST00000553340 NPBQ8NG41 125 aa13.71□□□□□ -0.22
SYNE3-202ENST00000553340 RAB37Q96AX2 223 aa13.71□□□□□ -0.22
SYNE3-202ENST00000553340 FANCD2OSQ96PS1 177 aa13.71□□□□□ -0.22
SYNE3-202ENST00000553340 NAA38Q9BRA0 125 aaKnown RBP13.71□□□□□ -0.22
SYNE3-202ENST00000553340 MAP1LC3AQ9H492 121 aa13.71□□□□□ -0.22
SYNE3-202ENST00000553340 DPM3Q9P2X0 92 aa13.71□□□□□ -0.22
SYNE3-202ENST00000553340 NPIPB5A8MRT5 1133 aa13.7□□□□□ -0.22
SYNE3-202ENST00000553340 NDUFA3O95167 84 aa13.7□□□□□ -0.22
SYNE3-202ENST00000553340 DKK2Q9UBU2 259 aa13.7□□□□□ -0.22
SYNE3-202ENST00000553340 ZZEF1O43149 2961 aa13.7□□□□□ -0.22
SYNE3-202ENST00000553340 ZNF80P51504 273 aaPredicted RBP13.7□□□□□ -0.22
SYNE3-202ENST00000553340 Q8TAT8 98 aa13.7□□□□□ -0.22
SYNE3-202ENST00000553340 ABHD17AQ96GS6 310 aa13.7□□□□□ -0.22
SYNE3-202ENST00000553340 C21orf62Q9NYP8 219 aa13.7□□□□□ -0.22
SYNE3-202ENST00000553340 CD3EP07766 207 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 WFDC3Q8IUB2 231 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 CFHR4Q92496 578 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 MGAQ8IWI9 3026 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 F8W735 103 aaPredicted RBP13.69□□□□□ -0.22
SYNE3-202ENST00000553340 HES1Q14469 280 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 PSMG4Q5JS54 123 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 PRSS57Q6UWY2 283 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 PIFOQ8TCI5 191 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 C18orf15Q96N68 181 aa13.69□□□□□ -0.22
SYNE3-202ENST00000553340 CEACAM3P40198 252 aa13.68□□□□□ -0.22
SYNE3-202ENST00000553340 C5orf64Q2M2E5 130 aa13.68□□□□□ -0.22
SYNE3-202ENST00000553340 VGLL1Q99990 258 aa13.68□□□□□ -0.22
SYNE3-202ENST00000553340 TPRP12270 2363 aaKnown RBP13.68□□□□□ -0.22
SYNE3-202ENST00000553340 A0A1W2PPM0 123 aa13.68□□□□□ -0.22
SYNE3-202ENST00000553340 OR5A1Q8NGJ0 315 aa13.68□□□□□ -0.22
SYNE3-202ENST00000553340 SELENOKQ9Y6D0 94 aa13.68□□□□□ -0.22
SYNE3-202ENST00000553340 KALRNO60229 2985 aa13.67□□□□□ -0.22
SYNE3-202ENST00000553340 ORM1P02763 201 aa13.67□□□□□ -0.22
SYNE3-202ENST00000553340 SRSF2Q01130 221 aaKnown RBP13.67□□□□□ -0.22
SYNE3-202ENST00000553340 SPCS1Q9Y6A9 102 aa13.67□□□□□ -0.22
SYNE3-202ENST00000553340 DMXL2Q8TDJ6 3036 aa13.67□□□□□ -0.22
SYNE3-202ENST00000553340 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.67□□□□□ -0.22
SYNE3-202ENST00000553340 OR11H6Q8NGC7 330 aa13.67□□□□□ -0.22
SYNE3-202ENST00000553340 RNF185Q96GF1 192 aa13.67□□□□□ -0.22
SYNE3-202ENST00000553340 MSRB1Q9NZV6 116 aa13.67□□□□□ -0.22
SYNE3-202ENST00000553340 LINC01546A6NGU7 62 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 G3V4G9 280 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 SCGB2A1O75556 95 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 FCER1GP30273 86 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 LEPP41159 167 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 ZNF562Q6V9R5 426 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 LY6G5BQ8NDX9 201 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 ARPC1AQ92747 370 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 CNFNQ9BYD5 112 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 DCHS1Q96JQ0 3298 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 ADGRG4Q8IZF6 3080 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 TTC9CQ8N5M4 171 aa13.66□□□□□ -0.22
SYNE3-202ENST00000553340 NXT2Q9NPJ8 142 aaKnown RBP13.66□□□□□ -0.22
SYNE3-202ENST00000553340 FABP5P3A8MUU1 101 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 IGHV3-23P01764 117 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 IGFL4Q6B9Z1 124 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 ZNF575Q86XF7 245 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 SMIM13P0DJ93 91 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 FABP2P12104 132 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 NEGR1Q7Z3B1 354 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 IGFBPL1Q8WX77 278 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms