RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 S4R3C0 116 aa10.18□□□□□ -0.78
SFSWAP-209ENST00000540469 IGKCP01834 107 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 IL4P05112 153 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 CNTFRP26992 372 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 TMEM200BQ69YZ2 307 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 TRBV19A0A075B6N1 114 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 A0A1B0GWB2 263 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 NDUFB3O43676 98 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 ORM1P02763 201 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 GATA3P23771 443 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 ACACAQ13085 2346 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 TRBV25-1A0A075B6N4 114 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 SH2D1AO60880 128 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 IGLV2-23P01705 113 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 CRIP1P50238 77 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 PLSCR4Q9NRQ2 329 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 SS18L2Q9UHA2 77 aa10.17□□□□□ -0.78
SFSWAP-209ENST00000540469 F8W1H4 67 aa10.16□□□□□ -0.78
SFSWAP-209ENST00000540469 CRYGCP07315 174 aa10.16□□□□□ -0.78
SFSWAP-209ENST00000540469 PPIFP30405 207 aaKnown RBP10.16□□□□□ -0.78
SFSWAP-209ENST00000540469 INSL3P51460 131 aa10.16□□□□□ -0.78
SFSWAP-209ENST00000540469 GAGE13Q4V321 117 aa10.16□□□□□ -0.78
SFSWAP-209ENST00000540469 PCNX1Q96RV3 2341 aa10.16□□□□□ -0.78
SFSWAP-209ENST00000540469 LCNL1Q6ZST4 164 aa10.16□□□□□ -0.78
SFSWAP-209ENST00000540469 CEND1Q8N111 149 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 SPRY4Q9C004 299 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 FBXL15Q9H469 300 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 TMEM14CQ9P0S9 112 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 IGKV2-40A0A087WW87 121 aaPredicted RBP10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 A0A1W2PNU3 283 aaPredicted RBP10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 NPIPB5A8MRT5 1133 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 DPM2O94777 84 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 IGKV2D-40P01614 121 aaPredicted RBP10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 GATA4P43694 442 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 ZNF493Q6ZR52 646 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 TTC9CQ8N5M4 171 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 GEMIN7Q9H840 131 aaKnown RBP10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 SPANXB1Q9NS25 103 aaPredicted RBP10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 MGAQ8IWI9 3026 aa10.15□□□□□ -0.78
SFSWAP-209ENST00000540469 FAM169BQ8N8A8 192 aa10.15□□□□□ -0.79
SFSWAP-209ENST00000540469 SPAG8Q99932 426 aaPredicted RBP10.15□□□□□ -0.79
SFSWAP-209ENST00000540469 ZNF785A8K8V0 405 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 IGLL5B9A064 214 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 DLX1P56177 255 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 Q8TAT8 98 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 SPTA1P02549 2419 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 AGRNO00468 2067 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 NBASA2RRP1 2371 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 RAI1Q7Z5J4 1906 aaPredicted RBP10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 TMEM8BA6NDV4 472 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 SIGLEC15Q6ZMC9 328 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 FOXI2Q6ZQN5 318 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 NCOR2Q9Y618 2525 aa10.14□□□□□ -0.79
SFSWAP-209ENST00000540469 KLF17Q5JT82 389 aaPredicted RBP10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 RNF125Q96EQ8 232 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 LINC00574Q9H8X3 128 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 ZNF292O60281 2723 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 CHD8Q9HCK8 2581 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 TRAV40A0A0B4J280 105 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 SFTA2Q6UW10 78 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 PPP1R27Q86WC6 154 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 TMEM158Q8WZ71 300 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 SHANK2-AS3Q9BTD1 123 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 PIEZO2Q9H5I5 2752 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 APOMO95445 188 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 IGHG3P01860 377 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 ODF1Q14990 250 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 FDCSPQ8NFU4 85 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 MSRB1Q9NZV6 116 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 HIGD1BQ9P298 99 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 MALRD1Q5VYJ5 2156 aa10.13□□□□□ -0.79
SFSWAP-209ENST00000540469 ANXA2RQ3ZCQ2 193 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 MYOZ3Q8TDC0 251 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 IGLV3-9A0A075B6K5 115 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 NCBP2LA6PVI3 153 aaKnown RBP10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 NDUFA3O95167 84 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 COX7A1P24310 79 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 SIGLEC9Q9Y336 463 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 C12orf74Q32Q52 190 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 PSMG4Q5JS54 123 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 CFAP161Q6P656 301 aa10.12□□□□□ -0.79
SFSWAP-209ENST00000540469 APC2O95996 2303 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 IGKV1-17P01599 117 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 LYPD2Q6UXB3 125 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 ZNF562Q6V9R5 426 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 GATD1Q8NB37 220 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 RPEQ96AT9 228 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 ZNF48Q96MX3 618 aaPredicted RBP10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 NXT2Q9NPJ8 142 aaKnown RBP10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 TRAV17A0A0B4J275 112 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 EGR2P11161 476 aaPredicted RBP10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 U3KQK5 164 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 ZGRF1Q86YA3 2104 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 IGF2RP11717 2491 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 WI2-2373I1.2A0A1W2PRP0 233 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 E9PLD3 99 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 ATP5LO75964 103 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 TNFRSF6BO95407 300 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 IGFL4Q6B9Z1 124 aa10.11□□□□□ -0.79
SFSWAP-209ENST00000540469 LYPD1Q8N2G4 141 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms