RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CIARTQ8N365 385 aaPredicted RBP3.25□□□□□ -1.89
CD44-226ENST00000527889 Q8N6K4 173 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 Q8N9W7 124 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 NPBQ8NG41 125 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 OR10P1Q8NGE3 313 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 OR2G3Q8NGZ4 309 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 OR5B3Q8NH48 314 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 SCGB1C1Q8TD33 95 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 RPUSD4Q96CM3 377 aaKnown RBP3.25□□□□□ -1.89
CD44-226ENST00000527889 PHYHIPLQ96FC7 376 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 SIGMAR1Q99720 223 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 RNF5Q99942 180 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 FAM103A1Q9BTL3 118 aaKnown RBP3.25□□□□□ -1.89
CD44-226ENST00000527889 TMEM147Q9BVK8 224 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 UQCC1Q9NVA1 299 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 FKBP11Q9NYL4 201 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 FBXO7Q9Y3I1 522 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 RYR2Q92736 4967 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 VWFP04275 2813 aa3.25□□□□□ -1.89
CD44-226ENST00000527889 IGLV5-52A0A0A0MRZ9 124 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 TGIF2-C20orf24A0A0A6YYL0 155 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 TRBV9A0A0B4J1U6 114 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 IGHV3-21A0A0B4J1V1 117 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 LINC00862A6NCI5 91 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 F6UZH7 168 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 H3BUX3 64 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 CCL24O00175 119 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 FGF16O43320 207 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 MPDU1O75352 247 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 PRH1P02810 166 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 SEC11BP0C7V7 166 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 HOXD3P31249 432 aaPredicted RBP3.24□□□□□ -1.89
CD44-226ENST00000527889 SNCAP37840 140 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 RAB5CP51148 216 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 MFAP2P55001 183 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 SELENOTP62341 195 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 ERHP84090 104 aaKnown RBP3.24□□□□□ -1.89
CD44-226ENST00000527889 DEFA5Q01523 94 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 AKR1C1Q04828 323 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 BTN1A1Q13410 526 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 FXYD3Q14802 87 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 TAL2Q16559 108 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 LRRC75BQ2VPJ9 315 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 C2orf83Q53S99 150 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 TMEM97Q5BJF2 176 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 EIF5AL1Q6IS14 154 aaKnown RBP3.24□□□□□ -1.89
CD44-226ENST00000527889 Q6ZRG5 221 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 PRR26Q8N8Z3 221 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 FAM213BQ8TBF2 198 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 PIFOQ8TCI5 191 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 SRSF12Q8WXF0 261 aaKnown RBP3.24□□□□□ -1.89
CD44-226ENST00000527889 TAF15Q92804 592 aaKnown RBP eCLIP3.24□□□□□ -1.89
CD44-226ENST00000527889 MRAP2Q96G30 205 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 P2RX4Q99571 388 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 HSPB9Q9BQS6 159 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 WDR61Q9GZS3 305 aaKnown RBP3.24□□□□□ -1.89
CD44-226ENST00000527889 VSIRQ9H7M9 311 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 RETNQ9HD89 108 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 TNFRSF19Q9NS68 423 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 MRPL36Q9P0J6 103 aaKnown RBP3.24□□□□□ -1.89
CD44-226ENST00000527889 CACFD1Q9UGQ2 172 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 SS18L2Q9UHA2 77 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 TENM1Q9UKZ4 2725 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 MGAM2Q2M2H8 2515 aa3.24□□□□□ -1.89
CD44-226ENST00000527889 NACAE9PAV3 2078 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 IGHV7-81A0A0B4J1V7 117 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 A0A1B0GUS0 222 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 CRXO43186 299 aaPredicted RBP3.23□□□□□ -1.89
CD44-226ENST00000527889 ATP5LO75964 103 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 HLA-DRB1P01911 266 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 DEFA4P12838 97 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 MDKP21741 143 aaPredicted RBP3.23□□□□□ -1.89
CD44-226ENST00000527889 OPRK1P41145 380 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 SUB1P53999 127 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-226ENST00000527889 PAFAH1B2P68402 229 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 ECSCRQ19T08 205 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 RPEL1Q2QD12 228 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 DEFB112Q30KQ8 113 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 OR10J3Q5JRS4 329 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 ACTL10Q5JWF8 245 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 FFAR4Q5NUL3 377 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 AKR1C8PQ5T2L2 129 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 MIC13Q5XKP0 118 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 ATRAIDQ6UW56 229 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 FA2HQ7L5A8 372 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 C5orf56Q8N8D9 126 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 ZNF114Q8NC26 417 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 OR1P1Q8NH06 330 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 OR2T6Q8NHC8 308 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 ARPC1AQ92747 370 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 GNPNAT1Q96EK6 184 aaPredicted RBP3.23□□□□□ -1.89
CD44-226ENST00000527889 ACY3Q96HD9 319 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 SLC35E1Q96K37 410 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 MGST2Q99735 147 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 FOXC2Q99958 501 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 RASL11BQ9BPW5 248 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 PSMG3Q9BT73 122 aaPredicted RBP3.23□□□□□ -1.89
CD44-226ENST00000527889 GGTLC1Q9BX51 225 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 NPCDR1Q9BY65 106 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 MAP1LC3AQ9H492 121 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms