RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ADARB2-AS1A8MUL3 147 aa15.92■□□□□ 0.14
VPS28-208ENST00000527797 B4DEV8 164 aa15.92■□□□□ 0.14
VPS28-208ENST00000527797 CENPWQ5EE01 88 aa15.92■□□□□ 0.14
VPS28-208ENST00000527797 LINC01551Q86U37 167 aa15.92■□□□□ 0.14
VPS28-208ENST00000527797 FMC1Q96HJ9 113 aa15.92■□□□□ 0.14
VPS28-208ENST00000527797 LY96Q9Y6Y9 160 aa15.92■□□□□ 0.14
VPS28-208ENST00000527797 TRAV8-2A0A0B4J237 113 aa15.91■□□□□ 0.14
VPS28-208ENST00000527797 ISLRO14498 428 aa15.91■□□□□ 0.14
VPS28-208ENST00000527797 HLA-DMBP28068 263 aa15.91■□□□□ 0.14
VPS28-208ENST00000527797 OCC1Q8TAD7 63 aa15.91■□□□□ 0.14
VPS28-208ENST00000527797 SELENOKQ9Y6D0 94 aa15.91■□□□□ 0.14
VPS28-208ENST00000527797 SERTM2A0A1B0GWG4 89 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 PGPEP1LA6NFU8 196 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 LCN12Q6JVE5 192 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 IGF2BP2-AS1Q96M15 143 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 NF1P21359 2839 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 IGKV3-7A0A075B6H7 116 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 ADAMTSL5Q6ZMM2 481 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 RNF182Q8N6D2 247 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 MRPL53Q96EL3 112 aaKnown RBP15.9■□□□□ 0.14
VPS28-208ENST00000527797 SGK494Q96LW2 274 aa15.9■□□□□ 0.14
VPS28-208ENST00000527797 SOCS3O14543 225 aa15.89■□□□□ 0.13
VPS28-208ENST00000527797 CSN3P07498 182 aa15.89■□□□□ 0.13
VPS28-208ENST00000527797 SAMD13Q5VXD3 122 aa15.89■□□□□ 0.13
VPS28-208ENST00000527797 BAGE2Q86Y30 109 aa15.89■□□□□ 0.13
VPS28-208ENST00000527797 AURKAIP1Q9NWT8 199 aaPredicted RBP15.89■□□□□ 0.13
VPS28-208ENST00000527797 MLXQ9UH92 298 aa15.89■□□□□ 0.13
VPS28-208ENST00000527797 ZNF705FA8MVS1 300 aaPredicted RBP15.88■□□□□ 0.13
VPS28-208ENST00000527797 OVOL1O14753 267 aa15.88■□□□□ 0.13
VPS28-208ENST00000527797 PSG3Q16557 428 aa15.88■□□□□ 0.13
VPS28-208ENST00000527797 TMEM75Q8N9X5 138 aa15.88■□□□□ 0.13
VPS28-208ENST00000527797 GBGT1Q8N5D6 347 aa15.87■□□□□ 0.13
VPS28-208ENST00000527797 A0A087WWC5 75 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 TRBV6-1A0A0K0K1D8 114 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 IGLV2-11P01706 119 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 PRB4P10163 310 aaPredicted RBP15.86■□□□□ 0.13
VPS28-208ENST00000527797 ID1P41134 155 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 BTN1A1Q13410 526 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 ISOC2Q96AB3 205 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 MS4A6AQ9H2W1 248 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 TRAV8-1A0A0A6YYK1 113 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 DNASE2O00115 360 aaPredicted RBP15.86■□□□□ 0.13
VPS28-208ENST00000527797 LTAP01374 205 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 IGLV2-8P01709 118 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 MT-ND4LP03901 98 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 FLI1Q01543 452 aaPredicted RBP15.86■□□□□ 0.13
VPS28-208ENST00000527797 PRNTQ86SH4 94 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 WFDC3Q8IUB2 231 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 DYNLRB2Q8TF09 96 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 SMIM12Q96EX1 92 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 PSG8Q9UQ74 426 aa15.86■□□□□ 0.13
VPS28-208ENST00000527797 IGKV2-40A0A087WW87 121 aaPredicted RBP15.85■□□□□ 0.13
VPS28-208ENST00000527797 FBLL1A6NHQ2 334 aaKnown RBP15.85■□□□□ 0.13
VPS28-208ENST00000527797 IGKV2D-40P01614 121 aaPredicted RBP15.85■□□□□ 0.13
VPS28-208ENST00000527797 Q86TA4 180 aa15.85■□□□□ 0.13
VPS28-208ENST00000527797 DCANP1Q8TF63 244 aa15.85■□□□□ 0.13
VPS28-208ENST00000527797 K7EN84 100 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 TSPAN4O14817 238 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 MGST1P10620 155 aaKnown RBP15.84■□□□□ 0.13
VPS28-208ENST00000527797 PAFAH1B2P68402 229 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 RNF212Q495C1 297 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 NHLRC2Q8NBF2 726 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 ZNF738Q8NE65 137 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 C20orf173Q96LM9 149 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 C2CD3Q4AC94 2353 aa15.84■□□□□ 0.13
VPS28-208ENST00000527797 RBAKDNA6NC62 111 aa15.83■□□□□ 0.13
VPS28-208ENST00000527797 PRAC2D3DTV9 90 aa15.83■□□□□ 0.13
VPS28-208ENST00000527797 GCGP01275 180 aa15.83■□□□□ 0.13
VPS28-208ENST00000527797 TMEM88Q6PEY1 159 aa15.83■□□□□ 0.13
VPS28-208ENST00000527797 CTDSP1Q9GZU7 261 aa15.83■□□□□ 0.13
VPS28-208ENST00000527797 SMCO4Q9NRQ5 59 aa15.83■□□□□ 0.13
VPS28-208ENST00000527797 ZFP30Q9Y2G7 519 aa15.83■□□□□ 0.13
VPS28-208ENST00000527797 TFPI2P48307 235 aa15.83■□□□□ 0.12
VPS28-208ENST00000527797 OR5I1Q13606 314 aa15.83■□□□□ 0.12
VPS28-208ENST00000527797 RBPMS2Q6ZRY4 209 aaKnown RBP15.83■□□□□ 0.12
VPS28-208ENST00000527797 CBLN2Q8IUK8 224 aa15.83■□□□□ 0.12
VPS28-208ENST00000527797 ANAPC16Q96DE5 110 aa15.83■□□□□ 0.12
VPS28-208ENST00000527797 CITED1Q99966 193 aa15.83■□□□□ 0.12
VPS28-208ENST00000527797 SIGLEC8Q9NYZ4 499 aa15.83■□□□□ 0.12
VPS28-208ENST00000527797 DEFB114Q30KQ6 69 aa15.82■□□□□ 0.12
VPS28-208ENST00000527797 TMEM183AQ8IXX5 376 aa15.82■□□□□ 0.12
VPS28-208ENST00000527797 SFRP2Q96HF1 295 aa15.82■□□□□ 0.12
VPS28-208ENST00000527797 VGLL1Q99990 258 aa15.82■□□□□ 0.12
VPS28-208ENST00000527797 TMEM242Q9NWH2 141 aa15.82■□□□□ 0.12
VPS28-208ENST00000527797 K7EQG2 157 aa15.81■□□□□ 0.12
VPS28-208ENST00000527797 PF4P02776 101 aa15.81■□□□□ 0.12
VPS28-208ENST00000527797 KRTAP24-1Q3LI83 254 aa15.81■□□□□ 0.12
VPS28-208ENST00000527797 MLST8Q9BVC4 326 aa15.81■□□□□ 0.12
VPS28-208ENST00000527797 PPP1R2P9O14990 202 aa15.8■□□□□ 0.12
VPS28-208ENST00000527797 BIN3Q9NQY0 253 aa15.8■□□□□ 0.12
VPS28-208ENST00000527797 H7BYZ3 331 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 ERVFC1-1P60608 527 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 SNRPD3P62318 126 aaKnown RBP15.79■□□□□ 0.12
VPS28-208ENST00000527797 ERCC8Q13216 396 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 SAPCD1Q5SSQ6 148 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 TMEM61Q8N0U2 210 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 OR10G8Q8NGN5 311 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 TUBA4BQ9H853 241 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 TRAV2A0A0B4J234 112 aa15.79■□□□□ 0.12
VPS28-208ENST00000527797 PRIMA1Q86XR5 153 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms