RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MRPL20Q9BYC9 149 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 IGKV1D-8A0A087WSZ0 117 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 IGHV3-21A0A0B4J1V1 117 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 MPDU1O75352 247 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 IGFBP3P17936 291 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 ICAM4Q14773 271 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 PMCHL1Q16048 86 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 DEFB121Q5J5C9 76 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 Q6YL49 198 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 OR9G4Q8NGQ1 327 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 C1RLQ9NZP8 487 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 PSMB11A5LHX3 300 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 ZNF785A8K8V0 405 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 G3V318 75 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 H3BP45 60 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 BUB1B-PAK6H3BSN5 160 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 TNFRSF13BO14836 293 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 CD28P10747 220 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 TMEM97Q5BJF2 176 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 CT45A1Q5HYN5 189 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 CT45A3Q8NHU0 189 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 M0R1W7 72 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 PSMB3P49720 205 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 RHOBP62745 196 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 PHLDA2Q53GA4 152 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 MRAPQ8TCY5 172 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 MAP1LC3CQ9BXW4 147 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 SLC39A9Q9NUM3 307 aa6.26□□□□□ -1.41
LIMCH1-219ENST00000514096 IGHV3OR16-8A0A075B7F1 116 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 H3BMG7 143 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 ACTL6BO94805 426 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 SEC11BP0C7V7 166 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 CT45A6P0DMU7 189 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 CT45A5P0DMU8 189 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 CT45A7P0DMV0 189 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 C18orf65Q6ZTR6 163 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 LRTM2Q8N967 370 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 HSD17B10Q99714 261 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 F8WDY8 70 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 HSPB1P04792 205 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 FAM106CPP0CH98 169 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 SPINK9Q5DT21 86 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 RASL11BQ9BPW5 248 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 SDF2L1Q9HCN8 221 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 TCRBV4S1A1TA0A5B7 111 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 FCGR3BO75015 233 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 IGHV3-23P01764 117 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 LY6G5BQ8NDX9 201 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 MRPL30Q8TCC3 161 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 AQP10Q96PS8 301 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 ZNF331Q9NQX6 463 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 NSG2Q9Y328 171 aa6.25□□□□□ -1.41
LIMCH1-219ENST00000514096 SAA2-SAA4A0A096LPE2 208 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 TRAV8-1A0A0A6YYK1 113 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 TINCRA0A1B0GVN0 87 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 SAA2P0DJI9 122 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 HOXD3P31249 432 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 COA6Q5JTJ3 125 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 MRPL27Q9P0M9 148 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 FBN3Q75N90 2809 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 C9orf118A6NHY6 69 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 C9JAW5 83 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 IGHV3-48P01763 117 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 GAPDHP04406 335 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 SRIP30626 198 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 UBE2G1P62253 170 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 ACTL10Q5JWF8 245 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 C9orf153Q5TBE3 101 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 OR10G7Q8NGN6 311 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 FLYWCH2Q96CP2 140 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 S1PR3Q99500 378 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 PRSS22Q9GZN4 317 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 HIGD1AQ9Y241 93 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 IGHV1-3A0A0C4DH29 117 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 GPX1P07203 203 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 PFN1P07737 140 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 ZNF497Q6ZNH5 498 aa6.24□□□□□ -1.41
LIMCH1-219ENST00000514096 CLPSL1A2RUU4 121 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 C17orf112F2Z3M2 114 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 K7EMI3 77 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 CXorf1O96002 111 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 IGKV1-16P04430 117 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 IFITM1P13164 125 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 MYOD1P15172 320 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 VDAC1P21796 283 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 GAGE13Q4V321 117 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 HAPLN4Q86UW8 402 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 SLC25A42Q86VD7 318 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 SPATA3Q8NHX4 192 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 PRELID3AQ96N28 172 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 NMES1Q9C002 83 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 IGKV3-7A0A075B6H7 116 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 LOC107984156A0A0G2JMH3 177 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 C17orf98A8MV24 154 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 NMUP48645 174 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 C10orf55Q5SWW7 151 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 NEGR1Q7Z3B1 354 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 ARL17AQ8IVW1 177 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 GRAMD2BQ96HH9 432 aa6.23□□□□□ -1.41
LIMCH1-219ENST00000514096 A0A0U1RRA0 63 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms