RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 TMEM136Q6ZRR5 245 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 SIRPDQ9H106 197 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 A6NDN8 102 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 VWC2LB2RUY7 222 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 H3BVH4 76 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 M0R1W7 72 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 HLA-DRB1P01911 266 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 Q8N976 141 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 ARPC1AQ92747 370 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 NABP2Q9BQ15 211 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 GEMIN7Q9H840 131 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 FA2HQ7L5A8 372 aa6.9□□□□□ -1.3
LIMCH1-209ENST00000509277 LY6G5BQ8NDX9 201 aa6.9□□□□□ -1.3
LIMCH1-209ENST00000509277 OR4F17Q8NGA8 305 aa6.9□□□□□ -1.3
LIMCH1-209ENST00000509277 SRRM4A7MD48 611 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 J3QR89 54 aa6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 RHOBP62745 196 aa6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 HSD52Q0P140 79 aa6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 ADAMTSL5Q6ZMM2 481 aa6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 ZNF418Q8TF45 676 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 ATP6V0BQ99437 205 aa6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 COMMD5Q9GZQ3 224 aa6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 S4R3C0 116 aa6.9□□□□□ -1.31
LIMCH1-209ENST00000509277 OTOGQ6ZRI0 2925 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 IGHV1-69DA0A0B4J2H0 117 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 IGHV1-69P01742 117 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 OR9G9P0C7N8 305 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 SAA1P0DJI8 122 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 PYYP10082 97 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 FAM71F2Q6NXP2 309 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 DEFB125Q8N687 156 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 OR51B2Q9Y5P1 312 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 CR1P17927 2039 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 ZNF469Q96JG9 3925 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 A0A1B0GWB2 263 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 H0YJW9 148 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 MT-ND6P03923 174 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 ORM2P19652 201 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 MC5RP33032 325 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 HCP5Q6MZN7 132 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 JMJD8Q96S16 334 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 C2CD3Q4AC94 2353 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 SYS1-DBNDD2H3BUS1 97 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 IGLV1-47P01700 117 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 NBEAP1P0C6P0 100 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 IGLC1P0CG04 106 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 Q0VG73 95 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 ECSCRQ19T08 205 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 GNB1LQ9BYB4 327 aa6.89□□□□□ -1.31
LIMCH1-209ENST00000509277 SLC25A5P05141 298 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 UBE2E1P51965 193 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 BRWD1-AS2P59051 145 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 DEFB112Q30KQ8 113 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 VMA21Q3ZAQ7 101 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 C1orf122Q6ZSJ8 110 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 ZBTB34Q8NCN2 500 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 OR4C13Q8NGP0 309 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 ADTRPQ96IZ2 230 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 ST20Q9HBF5 79 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 V9GYV3 84 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 ZFHX3Q15911 3703 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 ATRQ13535 2644 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 LOC107984156A0A0G2JMH3 177 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 TEX50A0A1B0GTY4 177 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 H3BMG7 143 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 LGALS7P47929 136 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 CX3CL1P78423 397 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 LOXL1Q08397 574 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 WFDC2Q14508 124 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 HIST2H2BDQ6DRA6 164 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 MRPL52Q86TS9 123 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 ARL17AQ8IVW1 177 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 C8orf46Q8TAG6 207 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 DEFB104AQ8WTQ1 72 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 C11orf1Q9H5F2 150 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 CYSRT1A8MQ03 144 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 B5MCH6 92 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 CD5LO43866 347 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 IGHV4-59P01825 116 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 CACNG7P62955 275 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 PAX8Q06710 450 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 LRRC75A-AS1Q8N1F1 130 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 RABAC1Q9UI14 185 aa6.88□□□□□ -1.31
LIMCH1-209ENST00000509277 GAGE12HA6NDE8 117 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 KLF17Q5JT82 389 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 SAMD5Q5TGI4 173 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 CCDC144NLQ6NUI1 221 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 TREML4Q6UXN2 200 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 KRTAP1-3Q8IUG1 177 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 TMUB1Q9BVT8 246 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 OR2J3O76001 311 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 APOHP02749 345 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 FAM106CPP0CH98 169 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 FCGR2BP31994 310 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 HIST1H1AQ02539 215 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 KHDC1LQ5JSQ8 128 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 TMEM14EPQ6UXP3 125 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 ZNF833PQ6ZTB9 187 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 C11orf44Q8N8P7 122 aa6.87□□□□□ -1.31
LIMCH1-209ENST00000509277 NUP35Q8NFH5 326 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms