RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 CST9LQ9H4G1 147 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 MYMXA0A1B0GTQ4 84 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 PRSS46E5RG02 174 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 RUSC1-AS1Q66K80 236 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 DEFB104AQ8WTQ1 72 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 RNF114Q9Y508 228 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 ZNF503-AS2A6NEH8 195 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 NPC2P61916 151 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 RSPO1Q2MKA7 263 aaPredicted RBP13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 IGHV2-70DA0A0C4DH43 119 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 DLEU1O43261 78 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 NUP210Q8TEM1 1887 aaPredicted RBP13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 DEFB131AP59861 70 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 ZNF664Q8N3J9 261 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 TIMM21Q9BVV7 248 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 C15orf65H3BRN8 121 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 PLA2G2CQ5R387 149 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 C6orf226Q5I0X4 101 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 C11orf68Q9H3H3 251 aaKnown RBP13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 IGLV3-9A0A075B6K5 115 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 GATD1Q8NB37 220 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 NAA38Q9BRA0 125 aaKnown RBP13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 DLX4Q92988 240 aaPredicted RBP13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 IGLV3-1P01715 115 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 FAM104BQ5XKR9 115 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 C18orf32Q8TCD1 76 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 TMEM14CQ9P0S9 112 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 RHODO00212 210 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 SSC4DQ8WTU2 575 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 ANAPC13Q9BS18 74 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 ZNF726P1Q15940 193 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 FAM231DQ6ZW35 169 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 TMEM213A2RRL7 107 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 RIPPLY3P57055 190 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 KIR3DS1Q14943 382 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 OVOL2Q9BRP0 275 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 ESDP10768 282 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 DUX4L9Q6RFH8 374 aaPredicted RBP13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 CHAC1Q9BUX1 264 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 NOTCH4Q99466 2003 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 RNF223E7ERA6 249 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 SP5Q6BEB4 398 aaPredicted RBP13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 C8orf49Q96NF6 230 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 PHF3Q92576 2039 aaKnown RBP13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 LEPROTO15243 131 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 ZNF124Q15973 351 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 CYYR1Q96J86 154 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 TRAV13-1A0A0B4J241 112 aa13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 CD5LO43866 347 aa13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 LGALS1P09382 135 aaKnown RBP13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 RIF1Q5UIP0 2472 aaKnown RBP13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 DKK1O94907 266 aa13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 H3BRN7 92 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 WT1-ASQ06250 92 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 UBE2DNLQ8IWF7 75 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 LINC01619G3V211 115 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 G3V318 75 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 SS18Q15532 418 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 PRIMA1Q86XR5 153 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 SPXQ9BT56 116 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 NDUFA4O00483 81 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 Q8N8P6 123 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 TMEM141Q96I45 108 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 MYO7BQ6PIF6 2116 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 C2orf82Q6UX34 121 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 MCRIP2Q9BUT9 160 aaKnown RBP13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 C20orf144Q9BQM9 153 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 GPR179Q6PRD1 2367 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 HEATR1Q9H583 2144 aaKnown RBP13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 UBE2V1Q13404 147 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 C8orf86Q6ZUL3 223 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 ROS1P08922 2347 aa13.21□□□□□ -0.3
PCDHA1-203ENST00000504120 FAM215AQ9Y5M1 114 aa13.21□□□□□ -0.3
PCDHA1-203ENST00000504120 ZNF134P52741 427 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 GAGE2BQ13066 116 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 GAGE2EQ4V326 116 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 KIAA2026Q5HYC2 2103 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 PRR25Q96S07 402 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 GAGE2DQ9UEU5 116 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 V9GYV3 84 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 Q5PR19 223 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 KAAG1Q9UBP8 84 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 TP53TG1Q9Y2A0 90 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 C10orf91Q5T1B1 145 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 NEGR1Q7Z3B1 354 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 THAP8Q8NA92 274 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 C2orf66Q6UXQ4 117 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 A8MWP6 167 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 DEFB130BP0DP73 79 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 DEFB130AP0DP74 79 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 POU2AF1Q16633 256 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 STPG4Q8N801 248 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 POLR3KQ9Y2Y1 108 aaPredicted RBP13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 SMIM27A0A1W2PRY6 76 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 SPINK13Q1W4C9 94 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 DOCK8Q8NF50 2099 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 J3QLI3 93 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 HAPLN4Q86UW8 402 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 LAMTOR3Q9UHA4 124 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 FANCMQ8IYD8 2048 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms