RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 RNF183Q96D59 192 aa9.22□□□□□ -0.93
HDAC4-210ENST00000493582 TRBV19A0A075B6N1 114 aa9.22□□□□□ -0.93
HDAC4-210ENST00000493582 IGFBP4P22692 258 aa9.22□□□□□ -0.93
HDAC4-210ENST00000493582 MUC3AQ02505 3323 aa9.22□□□□□ -0.93
HDAC4-210ENST00000493582 TTC9CQ8N5M4 171 aa9.22□□□□□ -0.93
HDAC4-210ENST00000493582 RBP4P02753 201 aa9.21□□□□□ -0.93
HDAC4-210ENST00000493582 RRN3P1Q2M238 152 aa9.21□□□□□ -0.93
HDAC4-210ENST00000493582 SIGLEC15Q6ZMC9 328 aa9.21□□□□□ -0.93
HDAC4-210ENST00000493582 NFE4Q86UQ8 179 aa9.21□□□□□ -0.93
HDAC4-210ENST00000493582 SS18L2Q9UHA2 77 aa9.21□□□□□ -0.93
HDAC4-210ENST00000493582 RP1L1Q8IWN7 2480 aaPredicted RBP9.21□□□□□ -0.93
HDAC4-210ENST00000493582 GATA1P15976 413 aaPredicted RBP9.21□□□□□ -0.94
HDAC4-210ENST00000493582 MRGPRG-AS1Q2M3A8 158 aa9.21□□□□□ -0.94
HDAC4-210ENST00000493582 NGBQ9NPG2 151 aa9.21□□□□□ -0.94
HDAC4-210ENST00000493582 RNF7Q9UBF6 113 aa9.21□□□□□ -0.94
HDAC4-210ENST00000493582 CYSLTR1Q9Y271 337 aa9.21□□□□□ -0.94
HDAC4-210ENST00000493582 SH2D1AO60880 128 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 DPM2O94777 84 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 IGLV1-44P01699 117 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 XGP55808 180 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 MDS2Q8NDY4 140 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 LINC00574Q9H8X3 128 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 TMEM158Q8WZ71 300 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 MRPL35Q9NZE8 188 aaKnown RBP9.2□□□□□ -0.94
HDAC4-210ENST00000493582 TMEM14CQ9P0S9 112 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 TRBV6-1A0A0K0K1D8 114 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 SMCPP49901 116 aaPredicted RBP9.2□□□□□ -0.94
HDAC4-210ENST00000493582 SRSF1Q07955 248 aaKnown RBP eCLIP9.2□□□□□ -0.94
HDAC4-210ENST00000493582 PTH2Q96A98 100 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 MAP1LC3AQ9H492 121 aa9.2□□□□□ -0.94
HDAC4-210ENST00000493582 BOD1L1Q8NFC6 3051 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 RAI1Q7Z5J4 1906 aaPredicted RBP9.19□□□□□ -0.94
HDAC4-210ENST00000493582 ZZEF1O43149 2961 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 TSPAN13O95857 204 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 CNTFRP26992 372 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 DMXL2Q8TDJ6 3036 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 LINC01548A6NM66 108 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 TM4SF5O14894 197 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 EGR2P11161 476 aaPredicted RBP9.19□□□□□ -0.94
HDAC4-210ENST00000493582 C9orf106Q8NAJ2 232 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 CSMD1Q96PZ7 3565 aa9.19□□□□□ -0.94
HDAC4-210ENST00000493582 VSTM5A8MXK1 200 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 VMA21Q3ZAQ7 101 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 Q6ZUT4 128 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 C1QTNF4Q9BXJ3 329 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 COLQQ9Y215 455 aaPredicted RBP9.18□□□□□ -0.94
HDAC4-210ENST00000493582 TPRP12270 2363 aaKnown RBP9.18□□□□□ -0.94
HDAC4-210ENST00000493582 SHISA9B4DS77 424 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 ATP1A1-AS1Q5TC04 95 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 RNF185Q96GF1 192 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 RASL11BQ9BPW5 248 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 M0R1B8 84 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 NDUFA3O95167 84 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 TNFRSF6BO95407 300 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 RPL27AP46776 148 aaKnown RBP9.18□□□□□ -0.94
HDAC4-210ENST00000493582 MORN3Q6PF18 240 aaPredicted RBP9.18□□□□□ -0.94
HDAC4-210ENST00000493582 SCNM1Q9BWG6 230 aa9.18□□□□□ -0.94
HDAC4-210ENST00000493582 TNFAIP6P98066 277 aaPredicted RBP9.17□□□□□ -0.94
HDAC4-210ENST00000493582 KLRD1Q13241 179 aa9.17□□□□□ -0.94
HDAC4-210ENST00000493582 PMS2CLQ68D20 193 aa9.17□□□□□ -0.94
HDAC4-210ENST00000493582 TACC2O95359 2948 aa9.17□□□□□ -0.94
HDAC4-210ENST00000493582 IGKV2-40A0A087WW87 121 aaPredicted RBP9.17□□□□□ -0.94
HDAC4-210ENST00000493582 IGKV1-17P01599 117 aa9.17□□□□□ -0.94
HDAC4-210ENST00000493582 IGKV2D-40P01614 121 aaPredicted RBP9.17□□□□□ -0.94
HDAC4-210ENST00000493582 CFAP126Q5VTH2 177 aa9.17□□□□□ -0.94
HDAC4-210ENST00000493582 PGPEP1Q9NXJ5 209 aa9.17□□□□□ -0.94
HDAC4-210ENST00000493582 ZNF80P51504 273 aaPredicted RBP9.16□□□□□ -0.94
HDAC4-210ENST00000493582 PRB3Q04118 309 aaPredicted RBP9.16□□□□□ -0.94
HDAC4-210ENST00000493582 C5orf64Q2M2E5 130 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 PSMG4Q5JS54 123 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 TMEM200BQ69YZ2 307 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 MAFAQ8NHW3 353 aaPredicted RBP9.16□□□□□ -0.94
HDAC4-210ENST00000493582 Q8TAT8 98 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 ERG28Q9UKR5 140 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 ZFP2Q6ZN57 461 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 SHANK2-AS3Q9BTD1 123 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 PROCRQ9UNN8 238 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 TRBV7-3A0A075B6L6 115 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 PRSS29PA6NIE9 313 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 HOXA3O43365 443 aaPredicted RBP9.16□□□□□ -0.94
HDAC4-210ENST00000493582 FCN3O75636 299 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 PSMB2P49721 201 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 TAL2Q16559 108 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 PVRIGQ6DKI7 326 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 SPRY4Q9C004 299 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 ZNF576Q9H609 170 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 S4R3C0 116 aa9.16□□□□□ -0.94
HDAC4-210ENST00000493582 LOC107984156A0A0G2JMH3 177 aa9.15□□□□□ -0.94
HDAC4-210ENST00000493582 DLX1P56177 255 aa9.15□□□□□ -0.94
HDAC4-210ENST00000493582 SRSF6Q13247 344 aaKnown RBP9.15□□□□□ -0.94
HDAC4-210ENST00000493582 ZNF575Q86XF7 245 aa9.15□□□□□ -0.94
HDAC4-210ENST00000493582 ARL17AQ8IVW1 177 aa9.15□□□□□ -0.94
HDAC4-210ENST00000493582 C1orf162Q8NEQ5 155 aaPredicted RBP9.15□□□□□ -0.94
HDAC4-210ENST00000493582 SRSF8Q9BRL6 282 aaKnown RBP9.15□□□□□ -0.94
HDAC4-210ENST00000493582 OR11H12B2RN74 326 aa9.15□□□□□ -0.95
HDAC4-210ENST00000493582 ATP5LO75964 103 aa9.15□□□□□ -0.95
HDAC4-210ENST00000493582 IGHV1-46P01743 117 aa9.15□□□□□ -0.95
HDAC4-210ENST00000493582 CCL8P80075 99 aa9.15□□□□□ -0.95
HDAC4-210ENST00000493582 OR11H1Q8NG94 326 aa9.15□□□□□ -0.95
HDAC4-210ENST00000493582 OR11H2Q8NH07 326 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms