RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TMEM189A5PLL7 270 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF705FA8MVS1 300 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 F6UB75 175 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 K7EPK0 472 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 CCNKO75909 580 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 MBPP02686 304 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 OR5G3P0C626 314 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF705DP0CH99 300 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF705BP0CI00 300 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 RPL7P18124 248 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 FXYD7P58549 80 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 PSG9Q00887 426 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 FAM78BQ5VT40 261 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF546Q86UE3 836 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF709Q8N972 641 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF431Q8TF32 576 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 SHANK2-AS3Q9BTD1 123 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 GGACTQ9BVM4 153 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 SCRT1Q9BWW7 348 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 SLC35B3Q9H1N7 401 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 TREM1Q9NP99 234 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 DOK5Q9P104 306 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 CELA1Q9UNI1 258 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 GOLT1BQ9Y3E0 138 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 RFNGQ9Y644 331 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 IGHV4-4A0A075B6R2 117 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 IGHV3OR16-12A0A075B7B8 117 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 A0A087X0K7 114 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 DEFB131BA0A096LNP1 70 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 TEX48A0A1B0GUV7 120 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 C7orf66A4D0T2 115 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 A8MTW9 85 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 CCSO14618 274 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 GOSR2O14653 212 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 GATCO43716 136 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 DUSP14O95147 198 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 HBE1P02100 147 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 AMBPP02760 352 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 SPART-AS1P0CW21 52 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 BCAP31P51572 246 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 FGL1Q08830 312 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 SLC38A11Q08AI6 406 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 C12orf74Q32Q52 190 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 PXDC1Q5TGL8 231 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 GSG1LQ6UXU4 331 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 LINC00299Q6ZSB3 139 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 RPP25LQ8N5L8 163 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF738Q8NE65 137 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF680Q8NEM1 530 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 S100ZQ8WXG8 99 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 C17orf77Q96MU5 243 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 UHRF2Q96PU4 802 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 SEC22CQ9BRL7 303 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 RNF126Q9BV68 326 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 ARL6Q9H0F7 186 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 APLNQ9ULZ1 77 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 KMT2AQ03164 3969 aa4.87□□□□□ -1.63
CCDC88A-213ENST00000476903 TRAV8-2A0A0B4J237 113 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 FAM240BA0A1B0GVZ2 78 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 AGPAT2O15120 278 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 DEDDO75618 318 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 PVALBP20472 110 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 CDKN1BP46527 198 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 FHITP49789 147 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 CAV2P51636 162 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 CNN1P51911 297 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 EMP1P54849 157 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 ARL16Q0P5N6 197 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 RAB31Q13636 194 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF767PQ75MW2 155 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 C12orf45Q8N5I9 185 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 RNF182Q8N6D2 247 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 LRRC20Q8TCA0 184 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 C2orf50Q96LR7 162 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 ARV1Q9H2C2 271 aa4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 LSM5Q9Y4Y9 91 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-213ENST00000476903 LOC102723971A0A1B0GUV8 181 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 COX7A2P2O60397 106 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 INSP01308 110 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 IGKV2-30P06310 120 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 CXCL2P19875 107 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 CXCL3P19876 107 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 RAB4AP20338 218 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 MALP21145 153 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 TAGLN2P37802 199 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 S100A10P60903 97 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 RAB4BP61018 213 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 HBG1P69891 147 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 HBG2P69892 147 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 ASAH1Q13510 395 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 SPINK13Q1W4C9 94 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 RRN3P1Q2M238 152 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 FAM222AQ5U5X8 452 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 AMTNQ6UX39 209 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 PATE2Q6UY27 113 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 LINC00305Q7Z4B0 112 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 C1orf158Q8N1D5 194 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 OR11H7Q8NGC8 314 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 IGF2BP2-AS1Q96M15 143 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms