RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 Q0VFX4 171 aa10.84□□□□□ -0.67
NPHP3-ACAD11-201ENST00000471702 PLEKHB2Q96CS7 222 aa10.84□□□□□ -0.67
NPHP3-ACAD11-201ENST00000471702 TRBV25-1A0A075B6N4 114 aa10.83□□□□□ -0.67
NPHP3-ACAD11-201ENST00000471702 ATRAIDQ6UW56 229 aa10.83□□□□□ -0.67
NPHP3-ACAD11-201ENST00000471702 PPBPP02775 128 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 CSRP1P21291 193 aaKnown RBP10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 UBE2AP49459 152 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 RHPN1-AS1Q9BWJ2 59 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 HIVEP2P31629 2446 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 ACACBO00763 2458 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PCNX3Q9H6A9 2034 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GPHB5Q86YW7 130 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GAGE12BA1L429 117 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 OVOL3O00110 214 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GAGE7O76087 117 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GAGE12FP0CL80 117 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GAGE12GP0CL81 117 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GAGE12IP0CL82 117 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 COL8A2P25067 703 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 A0A087WV48 116 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TRBV6-7A0A0A0MS04 114 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 IGKV4-1P06312 121 aa10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PAQR4Q8N4S7 273 aaPredicted RBP10.83□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 LYZL4Q96KX0 146 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 KLK9Q9UKQ9 250 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 COL11A2P13942 1736 aaPredicted RBP10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 HIVEP3Q5T1R4 2406 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 IGHV3-38A0A0C4DH36 116 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PRSS29PA6NIE9 313 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 RSPO3Q9BXY4 272 aaPredicted RBP10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TRAV12-2A0A075B6T6 113 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 RHODO00212 210 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GREM1O60565 184 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 NDUFS6O75380 124 aaKnown RBP10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 SPATA31B1PQ5VZV4 182 aa10.82□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 A0A1W2PRE2 83 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 CD59P13987 128 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 RNF183Q96D59 192 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 SIPA1L3O60292 1781 aaPredicted RBP10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 WISP3O95389 354 aaPredicted RBP10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PRR30Q53SZ7 412 aaPredicted RBP10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 LYPD2Q6UXB3 125 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TRAV3A0A0B4J244 114 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GNB1LQ9BYB4 327 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 LTBP4Q8N2S1 1624 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 A0A087X0K7 114 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 hDV102S1A0JD36 115 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 IGKV1-5P01602 117 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 C5orf64Q2M2E5 130 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 COL18A1P39060 1754 aa10.81□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PAX9P55771 341 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 C5orf24Q7Z6I8 188 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TIMM21Q9BVV7 248 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 F6UB75 175 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 BUB1B-PAK6H3BSN5 160 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 SH2D1AO60880 128 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TIRAPP58753 221 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TIMP3P35625 211 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 ZNRD1Q9P1U0 126 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PROP1O75360 226 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 BCL6BQ8N143 479 aaPredicted RBP10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 LIME1Q9H400 295 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 FANCD2OSQ96PS1 177 aa10.8□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 CD200R1LQ6Q8B3 271 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 ETDCA0A1B0GVM5 59 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 AMBPP02760 352 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 VSIRQ9H7M9 311 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 EIF4EBP2Q13542 120 aaPredicted RBP10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 C18orf12Q96KH6 178 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 AZU1P20160 251 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PRR4Q16378 134 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 KIF26AQ9ULI4 1882 aaPredicted RBP10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 SUPT4H1P63272 117 aaKnown RBP10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 POU2AF1Q16633 256 aa10.79□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 ANAPC1Q9H1A4 1944 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 A0A1B0GTI1 187 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 IGLV3-21P80748 117 aaPredicted RBP10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TSKUQ8WUA8 353 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 TMEM131Q92545 1883 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 SRSF3P84103 164 aaKnown RBP10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 SHISA3A0PJX4 238 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 GUSBP1Q15486 140 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 USMG5Q96IX5 58 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 FUSP35637 526 aaKnown RBP eCLIP10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 MINOS1Q5TGZ0 78 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 MINOS1-NBL1R4GNA1 71 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 C9JAW5 83 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 H0Y9J4 135 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 PLSCR4Q9NRQ2 329 aa10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 MRPS18CQ9Y3D5 142 aaKnown RBP10.78□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 SPATA25Q9BR10 227 aa10.77□□□□□ -0.68
NPHP3-ACAD11-201ENST00000471702 NOTCH4Q99466 2003 aa10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 IGKV1-9A0A0C4DH69 117 aa10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 PSG3Q16557 428 aa10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 CT83Q5H943 113 aa10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 TMEM170AQ8WVE7 144 aa10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 OSTCQ9NRP0 149 aa10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 MSMBP08118 114 aa10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 DAZ1Q9NQZ3 744 aaKnown RBP10.77□□□□□ -0.69
NPHP3-ACAD11-201ENST00000471702 A0A1B0GWJ7 208 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 181.5 ms