RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NAV2Q8IVL1 2488 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 I3L3M4 83 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 C9orf66Q5T8R8 295 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 C17orf82Q86X59 251 aaPredicted RBP5.8□□□□□ -1.48
UPF2-203ENST00000397053 SIGMAR1Q99720 223 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 TMEM242Q9NWH2 141 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 NHSL1Q5SYE7 1610 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 JMJD1CQ15652 2540 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 SCN8AQ9UQD0 1980 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 SDHAF1A6NFY7 115 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 LINC00473A8K010 186 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 NDUFA4O00483 81 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 RNASE2P10153 161 aaKnown RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 HLA-DRB4P13762 266 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 FLVCR1-AS1Q8TAF5 88 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 RNF126Q9BV68 326 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 HLA-DRB4X5D2U9 266 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 COL22A1Q8NFW1 1626 aaPredicted RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 A0A1W2PPI3 338 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 RHOHQ15669 191 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 NMSQ5H8A3 153 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 ZFAND6Q6FIF0 208 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 RGPD4Q7Z3J3 1758 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 ETDCA0A1B0GVM5 59 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 CLPSL1A2RUU4 121 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 CCL24O00175 119 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 MLANAQ16655 118 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 C2orf66Q6UXQ4 117 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 KLK5Q9Y337 293 aaPredicted RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 VIRMAQ69YN4 1812 aaKnown RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 WISP1O95388 367 aa5.79□□□□□ -1.48
UPF2-203ENST00000397053 TBX6O95947 436 aaPredicted RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 YPEL3P61236 119 aaPredicted RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 ZNF646O15015 1829 aaPredicted RBP5.79□□□□□ -1.48
UPF2-203ENST00000397053 TJP1Q07157 1748 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 YLPM1P49750 1951 aaKnown RBP5.78□□□□□ -1.48
UPF2-203ENST00000397053 C9JAW5 83 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 C1orf194Q5T5A4 169 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 DSCR8Q96T75 97 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 BCORQ6W2J9 1755 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 MYO9AB2RTY4 2548 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 BUB3O43684 328 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 SPART-AS1P0CW21 52 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 NTF4P34130 210 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 LINC00518Q8N0U6 118 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 ANKHD1Q8IWZ3 2542 aaKnown RBP5.78□□□□□ -1.48
UPF2-203ENST00000397053 IGKV1-27A0A075B6S5 117 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 H0YIZ8 118 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 FGF16O43320 207 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 GP9P14770 177 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 TMEM14EPQ6UXP3 125 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 GSN-AS1Q9NRJ2 163 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 VPREB3Q9UKI3 123 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 FN1P02751 2386 aaKnown RBP5.78□□□□□ -1.48
UPF2-203ENST00000397053 DEFB113Q30KQ7 82 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 C8orf49Q96NF6 230 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 TDRD15B5MCY1 1934 aaKnown RBP5.78□□□□□ -1.48
UPF2-203ENST00000397053 QSER1Q2KHR3 1735 aa5.78□□□□□ -1.48
UPF2-203ENST00000397053 CRYGCP07315 174 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 XCL1P47992 114 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 LINC00205P59089 165 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 IGFL3Q6UXB1 125 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 GLRX5Q86SX6 157 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 NUP35Q8NFH5 326 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 LAMB1P07942 1786 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 A0A0A6YYD4 124 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 TIRAPP58753 221 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 DEFB112Q30KQ8 113 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 CT83Q5H943 113 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 C8orf86Q6ZUL3 223 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 Q86TA4 180 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 LINC01551Q86U37 167 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 NOP10Q9NPE3 64 aaKnown RBP5.77□□□□□ -1.49
UPF2-203ENST00000397053 ATP5G1P05496 136 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 CSRP3P50461 194 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 MRPL23Q16540 153 aaKnown RBP5.77□□□□□ -1.49
UPF2-203ENST00000397053 DEFB105AQ8NG35 78 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 COX11Q9Y6N1 276 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 A0A087WV48 116 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 IGHV1-24A0A0C4DH33 117 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 PRB1P04280 392 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 RPL18AQ02543 176 aaKnown RBP5.77□□□□□ -1.49
UPF2-203ENST00000397053 NDUFA12Q9UI09 145 aa5.77□□□□□ -1.49
UPF2-203ENST00000397053 MIA3Q5JRA6 1907 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 TRAV12-1A0A0B4J245 112 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 IGHV4-59P01825 116 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 Q6ZQT7 251 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 CAMK2N2Q96S95 79 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 ATP6V0BQ99437 205 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 ZNRD1Q9P1U0 126 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 ZFYVE26Q68DK2 2539 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 KIAA1217Q5T5P2 1943 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 Q6P435 159 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 NDUFB1O75438 58 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 NBL1P41271 181 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 TCF15Q12870 199 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 IL17DQ8TAD2 202 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 TMEM141Q96I45 108 aa5.76□□□□□ -1.49
UPF2-203ENST00000397053 FANCD2OSQ96PS1 177 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms