RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 C18orf32Q8TCD1 76 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 ANAPC13Q9BS18 74 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 CSTL1Q9H114 145 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 GAGE2DQ9UEU5 116 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 CT83Q5H943 113 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 RHPN1-AS1Q9BWJ2 59 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 ZNF492Q9P255 531 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 C2orf16Q68DN1 1984 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 TRAV8-4A0A0B4J246 113 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 NDUFS6O75380 124 aaKnown RBP9.23□□□□□ -0.93
PTPRF-203ENST00000372407 CSPG4Q6UVK1 2322 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 SMKR1H3BMG3 65 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 LY6HO94772 140 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 ZNF415Q09FC8 603 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 KIR3DS1Q14943 382 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 MCRIP2Q9BUT9 160 aaKnown RBP9.23□□□□□ -0.93
PTPRF-203ENST00000372407 MED13Q9UHV7 2174 aa9.23□□□□□ -0.93
PTPRF-203ENST00000372407 WISP1O95388 367 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 IGKV1-39P01597 117 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 IGKV1D-39P04432 117 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 C3orf36Q3SXR2 165 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 DLX4Q92988 240 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-203ENST00000372407 NDUFA4L2Q9NRX3 87 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 LSM4Q9Y4Z0 139 aaKnown RBP9.22□□□□□ -0.93
PTPRF-203ENST00000372407 TNCP24821 2201 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 E7EQL1 145 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 GATA4P43694 442 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 CKS1BP61024 79 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 YPEL3P61236 119 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-203ENST00000372407 RSPO1Q2MKA7 263 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-203ENST00000372407 PIP4P2Q8N4L2 257 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 PRADC1Q9BSG0 188 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 TDGF1P3P51864 188 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 ZNF524Q96C55 264 aa9.22□□□□□ -0.93
PTPRF-203ENST00000372407 DTX2Q86UW9 622 aa9.21□□□□□ -0.93
PTPRF-203ENST00000372407 PROK2Q9HC23 129 aa9.21□□□□□ -0.93
PTPRF-203ENST00000372407 ZNRD1Q9P1U0 126 aa9.21□□□□□ -0.93
PTPRF-203ENST00000372407 FAM223BA6NKX1 122 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 TNFRSF6BO95407 300 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 SAA4P35542 130 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 Q6ZR03 302 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 FAM223AQ8IWN6 122 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 RASL10AQ92737 203 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 POLR3KQ9Y2Y1 108 aaPredicted RBP9.21□□□□□ -0.94
PTPRF-203ENST00000372407 TRGV1A0A0A0MS02 117 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 NDUFB8O95169 186 aa9.21□□□□□ -0.94
PTPRF-203ENST00000372407 A0A1B0GUS0 222 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 GAGE12BA1L429 117 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 EREGO14944 169 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 PAX4O43316 350 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 Q5PR19 223 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 DEFB104AQ8WTQ1 72 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 CYYR1Q96J86 154 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 DAZ1Q9NQZ3 744 aaKnown RBP9.2□□□□□ -0.94
PTPRF-203ENST00000372407 IGHV3-73A0A0B4J1V6 119 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 ZNF726P1Q15940 193 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 BPESC1Q9GZL8 116 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 JPT2Q9H910 190 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 OVOL3O00110 214 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 CFHR2P36980 270 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 C10orf91Q5T1B1 145 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 STPG4Q8N801 248 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 C1orf159Q96HA4 380 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 KIAA1671Q9BY89 1806 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 S100A7L2Q5SY68 101 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 FAM231DQ6ZW35 169 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 CHAC1Q9BUX1 264 aa9.2□□□□□ -0.94
PTPRF-203ENST00000372407 FAM104BQ5XKR9 115 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 LURAP1LQ8IV03 231 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 LY6G5BQ8NDX9 201 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 COX11Q9Y6N1 276 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 Q8TCH9 128 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 TRBV19A0A075B6N1 114 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 SAP30O75446 220 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 IL15RAQ13261 267 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 TMEM75Q8N9X5 138 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 TMEM213A2RRL7 107 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 IGHV2-5P01817 119 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 WDR86Q86TI4 376 aa9.19□□□□□ -0.94
PTPRF-203ENST00000372407 COL4A4P53420 1690 aaPredicted RBP9.18□□□□□ -0.94
PTPRF-203ENST00000372407 ANKHD1Q8IWZ3 2542 aaKnown RBP9.18□□□□□ -0.94
PTPRF-203ENST00000372407 ERCC8Q13216 396 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 C2orf82Q6UX34 121 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 A0A087WWL8 130 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 MYMXA0A1B0GTQ4 84 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 ESDP10768 282 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 ZFAND6Q6FIF0 208 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 DTX1Q86Y01 620 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 GATD1Q8NB37 220 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 C1QTNF4Q9BXJ3 329 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 SNHG12Q9BXW3 62 aa9.18□□□□□ -0.94
PTPRF-203ENST00000372407 NCOR2Q9Y618 2525 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 IGLC2P0DOY2 106 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 IGLC3P0DOY3 106 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 NPC2P61916 151 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 FAM110DQ8TAY7 271 aaPredicted RBP9.17□□□□□ -0.94
PTPRF-203ENST00000372407 DYSFO75923 2080 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 PRSS46E5RG02 174 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 UBE2E1P51965 193 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 C6orf226Q5I0X4 101 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms