RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SLC50A1Q9BRV3 221 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 TMEM250H0YL14 139 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 HLA-DMBP28068 263 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 AAMDCQ9H7C9 122 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 SOCS3O14543 225 aa14.98□□□□□ -0.01
CLN3-205ENST00000359984 GNG5P63218 68 aa14.98□□□□□ -0.01
CLN3-205ENST00000359984 C5orf17Q8NAS9 161 aa14.98□□□□□ -0.01
CLN3-205ENST00000359984 C11orf52Q96A22 123 aa14.98□□□□□ -0.01
CLN3-205ENST00000359984 MS4A6AQ9H2W1 248 aa14.98□□□□□ -0.01
CLN3-205ENST00000359984 EPDR1Q9UM22 224 aa14.98□□□□□ -0.01
CLN3-205ENST00000359984 A0A087WWC5 75 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 M0R3E3 92 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 SHISA2Q6UWI4 295 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 C16orf92Q96LL3 132 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 YPEL4Q96NS1 127 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 RNF182Q8N6D2 247 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 DCANP1Q8TF63 244 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 HIST1H2BAQ96A08 127 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 TCEAL7Q9BRU2 100 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 SDF2L1Q9HCN8 221 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 COL6A5A8TX70 2615 aa14.97□□□□□ -0.01
CLN3-205ENST00000359984 WFDC3Q8IUB2 231 aa14.96□□□□□ -0.01
CLN3-205ENST00000359984 TMEM61Q8N0U2 210 aa14.96□□□□□ -0.01
CLN3-205ENST00000359984 CMTM2Q8TAZ6 248 aa14.96□□□□□ -0.01
CLN3-205ENST00000359984 RPH3ALQ9UNE2 315 aa14.96□□□□□ -0.01
CLN3-205ENST00000359984 VWFP04275 2813 aa14.96□□□□□ -0.02
CLN3-205ENST00000359984 PEX7O00628 323 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 SAP30O75446 220 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 PRB4P10163 310 aaPredicted RBP14.95□□□□□ -0.02
CLN3-205ENST00000359984 TFPI2P48307 235 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 PNRC1Q12796 327 aaPredicted RBP14.95□□□□□ -0.02
CLN3-205ENST00000359984 CD300EQ496F6 205 aaPredicted RBP14.95□□□□□ -0.02
CLN3-205ENST00000359984 SPATA3Q8NHX4 192 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 ISOC2Q96AB3 205 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 RPUSD4Q96CM3 377 aaKnown RBP14.95□□□□□ -0.02
CLN3-205ENST00000359984 DERL1Q9BUN8 251 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 STAB1Q9NY15 2570 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 C2CD4CQ8TF44 421 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 C20orf173Q96LM9 149 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 PARLQ9H300 379 aa14.95□□□□□ -0.02
CLN3-205ENST00000359984 ZNF705FA8MVS1 300 aaPredicted RBP14.94□□□□□ -0.02
CLN3-205ENST00000359984 B4DEV8 164 aa14.94□□□□□ -0.02
CLN3-205ENST00000359984 ISLRO14498 428 aa14.94□□□□□ -0.02
CLN3-205ENST00000359984 TCRAP04437 139 aa14.94□□□□□ -0.02
CLN3-205ENST00000359984 RBPMS2Q6ZRY4 209 aaKnown RBP14.94□□□□□ -0.02
CLN3-205ENST00000359984 LINC00479Q96M42 142 aa14.94□□□□□ -0.02
CLN3-205ENST00000359984 ATG101Q9BSB4 218 aa14.94□□□□□ -0.02
CLN3-205ENST00000359984 K7EQG2 157 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 MT-ND4LP03901 98 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 PAFAH1B2P68402 229 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 LCN12Q6JVE5 192 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 ZNF727A8MUV8 499 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 DIRC3C9JPN6 131 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 CSN1S1P47710 185 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 PSG3Q16557 428 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 ZNF674Q2M3X9 581 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 SAMD13Q5VXD3 122 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 CLEC5AQ9NY25 188 aa14.93□□□□□ -0.02
CLN3-205ENST00000359984 IZUMO1RA6ND01 250 aa14.92□□□□□ -0.02
CLN3-205ENST00000359984 FLI1Q01543 452 aaPredicted RBP14.92□□□□□ -0.02
CLN3-205ENST00000359984 RNF212Q495C1 297 aa14.92□□□□□ -0.02
CLN3-205ENST00000359984 GOLT1AQ6ZVE7 132 aa14.92□□□□□ -0.02
CLN3-205ENST00000359984 FAM24BQ8N5W8 94 aa14.92□□□□□ -0.02
CLN3-205ENST00000359984 MRPL53Q96EL3 112 aaKnown RBP14.92□□□□□ -0.02
CLN3-205ENST00000359984 TRAV34A0A0B4J273 112 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 TRAV25A0A0B4J276 109 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 PRAC2D3DTV9 90 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 RPL35P42766 123 aaKnown RBP14.91□□□□□ -0.02
CLN3-205ENST00000359984 ARL6IP6Q8N6S5 226 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 SMIM7Q9BQ49 75 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 NAT8Q9UHE5 227 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 IGLV1-51P01701 117 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 ID1P41134 155 aa14.91□□□□□ -0.02
CLN3-205ENST00000359984 CXorf65A6NEN9 183 aa14.9□□□□□ -0.02
CLN3-205ENST00000359984 CNN1P51911 297 aaKnown RBP14.9□□□□□ -0.02
CLN3-205ENST00000359984 TMEM242Q9NWH2 141 aa14.9□□□□□ -0.02
CLN3-205ENST00000359984 KLF12Q9Y4X4 402 aa14.9□□□□□ -0.02
CLN3-205ENST00000359984 IGKV2-40A0A087WW87 121 aaPredicted RBP14.89□□□□□ -0.03
CLN3-205ENST00000359984 TRAV2A0A0B4J234 112 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 IGKV2D-40P01614 121 aaPredicted RBP14.89□□□□□ -0.03
CLN3-205ENST00000359984 TMEM241Q24JQ0 296 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 ZNF738Q8NE65 137 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 SGK494Q96LW2 274 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 MDFIQ99750 246 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 SPAG8Q99932 426 aaPredicted RBP14.89□□□□□ -0.03
CLN3-205ENST00000359984 TRBV20OR9-2A0A075B6H5 130 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 ZNF688P0C7X2 276 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 WFDC9Q8NEX5 89 aa14.89□□□□□ -0.03
CLN3-205ENST00000359984 TRAV8-1A0A0A6YYK1 113 aa14.88□□□□□ -0.03
CLN3-205ENST00000359984 RAB5AP20339 215 aa14.88□□□□□ -0.03
CLN3-205ENST00000359984 TMEM183BQ1AE95 376 aa14.88□□□□□ -0.03
CLN3-205ENST00000359984 ZNF256Q9Y2P7 627 aaPredicted RBP14.88□□□□□ -0.03
CLN3-205ENST00000359984 IGLV2-11P01706 119 aa14.87□□□□□ -0.03
CLN3-205ENST00000359984 CD33P20138 364 aa14.87□□□□□ -0.03
CLN3-205ENST00000359984 DEFB1P60022 68 aa14.87□□□□□ -0.03
CLN3-205ENST00000359984 SNRPD3P62318 126 aaKnown RBP14.87□□□□□ -0.03
CLN3-205ENST00000359984 RPL23P62829 140 aaKnown RBP14.87□□□□□ -0.03
CLN3-205ENST00000359984 OR2K2Q8NGT1 345 aa14.87□□□□□ -0.03
CLN3-205ENST00000359984 SERTM2A0A1B0GWG4 89 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 K7EQM0 130 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms