RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 DEFB136Q30KP8 78 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 TMEM170AQ8WVE7 144 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 PCNX2A6NKB5 2137 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 IGF2BP2-AS1Q96M15 143 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 ERG28Q9UKR5 140 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 NUP35Q8NFH5 326 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 VWC2LB2RUY7 222 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 PRIMA1Q86XR5 153 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 PLXNA3P51805 1871 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 AMN1Q8IY45 258 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 FRMPD3Q5JV73 1810 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 GAGE6Q13070 117 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 TMEM158Q8WZ71 300 aa12.53□□□□□ -0.4
PTPRF-201ENST00000359947 A0A0G2JRQ6 117 aa12.52□□□□□ -0.4
PTPRF-201ENST00000359947 Q6ZR03 302 aa12.52□□□□□ -0.4
PTPRF-201ENST00000359947 C15orf62A8K5M9 175 aa12.52□□□□□ -0.4
PTPRF-201ENST00000359947 NMSQ5H8A3 153 aa12.52□□□□□ -0.4
PTPRF-201ENST00000359947 C5orf30Q96GV9 206 aa12.52□□□□□ -0.4
PTPRF-201ENST00000359947 KMT2EQ8IZD2 1858 aa12.52□□□□□ -0.4
PTPRF-201ENST00000359947 CHCHD1Q96BP2 118 aaKnown RBP12.52□□□□□ -0.41
PTPRF-201ENST00000359947 TRAV8-4A0A0B4J246 113 aa12.52□□□□□ -0.41
PTPRF-201ENST00000359947 TMEM238C9JI98 176 aa12.52□□□□□ -0.41
PTPRF-201ENST00000359947 MCRIP2Q9BUT9 160 aaKnown RBP12.52□□□□□ -0.41
PTPRF-201ENST00000359947 A0A0J9YY99 117 aa12.52□□□□□ -0.41
PTPRF-201ENST00000359947 IGHV4-59P01825 116 aa12.52□□□□□ -0.41
PTPRF-201ENST00000359947 ANAPC10Q9UM13 185 aa12.52□□□□□ -0.41
PTPRF-201ENST00000359947 PLXNA4Q9HCM2 1894 aa12.52□□□□□ -0.41
PTPRF-201ENST00000359947 PFN2P35080 140 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 HIST1H4AP62805 103 aaKnown RBP12.51□□□□□ -0.41
PTPRF-201ENST00000359947 DEFB112Q30KQ8 113 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 LAMTOR2Q9Y2Q5 125 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 J3QLI3 93 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 ANXA2RQ3ZCQ2 193 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 NAA38Q9BRA0 125 aaKnown RBP12.51□□□□□ -0.41
PTPRF-201ENST00000359947 ZNF503-AS2A6NEH8 195 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 LHFPL1Q86WI0 220 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 CREBBPQ92793 2442 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 LEPROTO15243 131 aa12.51□□□□□ -0.41
PTPRF-201ENST00000359947 FAM215AQ9Y5M1 114 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 MUC6Q6W4X9 2439 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 TRBV25-1A0A075B6N4 114 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 WISP1O95388 367 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 RPL32P62910 135 aaKnown RBP12.5□□□□□ -0.41
PTPRF-201ENST00000359947 FAM208BQ5VWN6 2430 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 DIAPH2-AS1Q14236 149 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 SHANK2-AS3Q9BTD1 123 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 DEFB113Q30KQ7 82 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 PROK2Q9HC23 129 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 TPSG1Q9NRR2 321 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 ITGB1BP1O14713 200 aa12.5□□□□□ -0.41
PTPRF-201ENST00000359947 IGLV3-9A0A075B6K5 115 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 ATXN8Q156A1 80 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 TMEM14EPQ6UXP3 125 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 NKAPP1Q8N9T2 125 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 ZNRF2Q8NHG8 242 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 TEX36Q5VZQ5 186 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 TIMM21Q9BVV7 248 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 LINC00587B1AMM8 73 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 ZNF114Q8NC26 417 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 Q6ZRM9 215 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 PIP4P1Q86T03 277 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 THAP8Q8NA92 274 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 SIGMAR1Q99720 223 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 Q9HAA7 133 aa12.49□□□□□ -0.41
PTPRF-201ENST00000359947 TRAV9-2A0A087WT02 112 aa12.48□□□□□ -0.41
PTPRF-201ENST00000359947 VWC2Q2TAL6 325 aa12.48□□□□□ -0.41
PTPRF-201ENST00000359947 LOXP28300 417 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-201ENST00000359947 C8orf86Q6ZUL3 223 aa12.48□□□□□ -0.41
PTPRF-201ENST00000359947 PLEKHB2Q96CS7 222 aa12.48□□□□□ -0.41
PTPRF-201ENST00000359947 WT1P19544 449 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-201ENST00000359947 MPZP25189 248 aa12.48□□□□□ -0.41
PTPRF-201ENST00000359947 SEC11AP67812 179 aa12.48□□□□□ -0.41
PTPRF-201ENST00000359947 ZNF48Q96MX3 618 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-201ENST00000359947 PTPRQQ9UMZ3 2332 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 NXPH4O95158 308 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 FAM90A2PQ658T7 463 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 TMEM126AQ9H061 195 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 C17orf58Q2M2W7 97 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 TRPT1Q86TN4 253 aaKnown RBP12.47□□□□□ -0.41
PTPRF-201ENST00000359947 TSSC4Q9Y5U2 329 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-201ENST00000359947 hDV102S1A0JD36 115 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 CCL24O00175 119 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 NOTCH4Q99466 2003 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 TRBV6-6A0A0A6YYG2 114 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 IGKV1-39P01597 117 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 IGKV1D-39P04432 117 aa12.47□□□□□ -0.41
PTPRF-201ENST00000359947 ANGP03950 147 aaKnown RBP12.46□□□□□ -0.41
PTPRF-201ENST00000359947 LINC01551Q86U37 167 aa12.46□□□□□ -0.41
PTPRF-201ENST00000359947 TRAV26-2A0A0B4J265 109 aa12.46□□□□□ -0.41
PTPRF-201ENST00000359947 WDR86Q86TI4 376 aa12.46□□□□□ -0.41
PTPRF-201ENST00000359947 LYPD1Q8N2G4 141 aa12.46□□□□□ -0.41
PTPRF-201ENST00000359947 CXCL1P09341 107 aa12.46□□□□□ -0.41
PTPRF-201ENST00000359947 MMP23AO75900 390 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 SUMO4Q6EEV6 95 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 BDP1A6H8Y1 2624 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 IGKV1OR2-108A0A075B7D4 117 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BKO60814 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BJP06899 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HIST1H2BOP23527 126 aa12.46□□□□□ -0.42
PTPRF-201ENST00000359947 HOXD3P31249 432 aaPredicted RBP12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms