RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ISLRO14498 428 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 HLA-DMBP28068 263 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 KRTAP10-3P60369 221 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 OR9G4Q8NGQ1 327 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 OCC1Q8TAD7 63 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 FMC1Q96HJ9 113 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 PRELID1Q9Y255 219 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 TRAV8-2A0A0B4J237 113 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 K7EQM0 130 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 FOLR2P14207 255 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 C16orf92Q96LL3 132 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 NRN1Q9NPD7 142 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 AURKAIP1Q9NWT8 199 aaPredicted RBP14.15□□□□□ -0.14
CLN3-204ENST00000357857 SELENOKQ9Y6D0 94 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 ADARB2-AS1A8MUL3 147 aa14.14□□□□□ -0.15
CLN3-204ENST00000357857 FOXL1Q12952 345 aa14.14□□□□□ -0.15
CLN3-204ENST00000357857 BTN1A1Q13410 526 aa14.14□□□□□ -0.15
CLN3-204ENST00000357857 SGK494Q96LW2 274 aa14.14□□□□□ -0.15
CLN3-204ENST00000357857 CLEC5AQ9NY25 188 aa14.14□□□□□ -0.15
CLN3-204ENST00000357857 SERTM2A0A1B0GWG4 89 aa14.13□□□□□ -0.15
CLN3-204ENST00000357857 NSUN5P1Q3KNT7 163 aa14.13□□□□□ -0.15
CLN3-204ENST00000357857 RNF182Q8N6D2 247 aa14.13□□□□□ -0.15
CLN3-204ENST00000357857 IGKV3-7A0A075B6H7 116 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 A0A087WWC5 75 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 SOCS3O14543 225 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 PRB4P10163 310 aaPredicted RBP14.12□□□□□ -0.15
CLN3-204ENST00000357857 LCN12Q6JVE5 192 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 ADAMTSL5Q6ZMM2 481 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 BAGE2Q86Y30 109 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 NDUFA11Q86Y39 141 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 TMEM75Q8N9X5 138 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 ISOC2Q96AB3 205 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 MRPL53Q96EL3 112 aaKnown RBP14.12□□□□□ -0.15
CLN3-204ENST00000357857 TRAV8-1A0A0A6YYK1 113 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 ZNF705FA8MVS1 300 aaPredicted RBP14.12□□□□□ -0.15
CLN3-204ENST00000357857 IGLV2-8P01709 118 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 TMEM88Q6PEY1 159 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 MLXQ9UH92 298 aa14.12□□□□□ -0.15
CLN3-204ENST00000357857 TRBV6-1A0A0K0K1D8 114 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 K7EN84 100 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 TSPAN4O14817 238 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 IGLV2-11P01706 119 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 PSG3Q16557 428 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 RNF212Q495C1 297 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 Q86TA4 180 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 CBLN2Q8IUK8 224 aa14.11□□□□□ -0.15
CLN3-204ENST00000357857 IGKV2-40A0A087WW87 121 aaPredicted RBP14.1□□□□□ -0.15
CLN3-204ENST00000357857 DNASE2O00115 360 aaPredicted RBP14.1□□□□□ -0.15
CLN3-204ENST00000357857 IGKV2D-40P01614 121 aaPredicted RBP14.1□□□□□ -0.15
CLN3-204ENST00000357857 MT-ND4LP03901 98 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 CSN3P07498 182 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 FLI1Q01543 452 aaPredicted RBP14.1□□□□□ -0.15
CLN3-204ENST00000357857 SAMD13Q5VXD3 122 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 NHLRC2Q8NBF2 726 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 SMCO4Q9NRQ5 59 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 LTAP01374 205 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 MGST1P10620 155 aaKnown RBP14.1□□□□□ -0.15
CLN3-204ENST00000357857 PRNTQ86SH4 94 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 GBGT1Q8N5D6 347 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 SMIM12Q96EX1 92 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 PSG8Q9UQ74 426 aa14.1□□□□□ -0.15
CLN3-204ENST00000357857 WNK1Q9H4A3 2382 aa14.09□□□□□ -0.15
CLN3-204ENST00000357857 OVOL1O14753 267 aa14.09□□□□□ -0.15
CLN3-204ENST00000357857 C20orf173Q96LM9 149 aa14.09□□□□□ -0.15
CLN3-204ENST00000357857 CTDSP1Q9GZU7 261 aa14.09□□□□□ -0.15
CLN3-204ENST00000357857 MS4A6AQ9H2W1 248 aa14.09□□□□□ -0.15
CLN3-204ENST00000357857 PRAC2D3DTV9 90 aa14.08□□□□□ -0.16
CLN3-204ENST00000357857 GCGP01275 180 aa14.08□□□□□ -0.16
CLN3-204ENST00000357857 OR5I1Q13606 314 aa14.08□□□□□ -0.16
CLN3-204ENST00000357857 DYNLRB2Q8TF09 96 aa14.08□□□□□ -0.16
CLN3-204ENST00000357857 DCANP1Q8TF63 244 aa14.08□□□□□ -0.16
CLN3-204ENST00000357857 ANAPC16Q96DE5 110 aa14.08□□□□□ -0.16
CLN3-204ENST00000357857 SFRP2Q96HF1 295 aa14.08□□□□□ -0.16
CLN3-204ENST00000357857 RBAKDNA6NC62 111 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 FBLL1A6NHQ2 334 aaKnown RBP14.07□□□□□ -0.16
CLN3-204ENST00000357857 ID1P41134 155 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 WFDC3Q8IUB2 231 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 ZNF738Q8NE65 137 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 TMEM242Q9NWH2 141 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 JMJD1CQ15652 2540 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 VGLL1Q99990 258 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 MLST8Q9BVC4 326 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 ZFP30Q9Y2G7 519 aa14.07□□□□□ -0.16
CLN3-204ENST00000357857 H7BYZ3 331 aa14.06□□□□□ -0.16
CLN3-204ENST00000357857 PPP1R2P9O14990 202 aa14.06□□□□□ -0.16
CLN3-204ENST00000357857 TFPI2P48307 235 aa14.06□□□□□ -0.16
CLN3-204ENST00000357857 TMEM183AQ8IXX5 376 aa14.06□□□□□ -0.16
CLN3-204ENST00000357857 TUBA4BQ9H853 241 aa14.06□□□□□ -0.16
CLN3-204ENST00000357857 NIPBLQ6KC79 2804 aaeCLIP14.05□□□□□ -0.16
CLN3-204ENST00000357857 K7EQG2 157 aa14.05□□□□□ -0.16
CLN3-204ENST00000357857 ERVFC1-1P60608 527 aa14.05□□□□□ -0.16
CLN3-204ENST00000357857 PAFAH1B2P68402 229 aa14.05□□□□□ -0.16
CLN3-204ENST00000357857 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.05□□□□□ -0.16
CLN3-204ENST00000357857 OR10G8Q8NGN5 311 aa14.05□□□□□ -0.16
CLN3-204ENST00000357857 RIPPLY3P57055 190 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 ERCC8Q13216 396 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 BIN3Q9NQY0 253 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 CXorf65A6NEN9 183 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 DEFB114Q30KQ6 69 aa14.04□□□□□ -0.16
CLN3-204ENST00000357857 PRR27Q6MZM9 219 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms