RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 MEOX2P50222 304 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 RAB5BP61020 215 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 PRR20EP86478 221 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 PRR20CP86479 221 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 PRR20DP86480 221 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 PRR20BP86481 221 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 PRR20AP86496 221 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 MIC13Q5XKP0 118 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 OR11H2Q8NH07 326 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 C16orf92Q96LL3 132 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 SAV1Q9H4B6 383 aaPredicted RBP11.53□□□□□ -0.56
CLN3-201ENST00000333496 RPS10P5Q9NQ39 176 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 HLA-DRB4X5D2U9 266 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 RBFOX3A6NFN3 312 aa11.52□□□□□ -0.57
CLN3-201ENST00000333496 MRPS12O15235 138 aaKnown RBP11.52□□□□□ -0.57
CLN3-201ENST00000333496 MT-ND4LP03901 98 aa11.52□□□□□ -0.57
CLN3-201ENST00000333496 MORN5Q5VZ52 161 aa11.52□□□□□ -0.57
CLN3-201ENST00000333496 LINC00305Q7Z4B0 112 aa11.52□□□□□ -0.57
CLN3-201ENST00000333496 CSNK1G2-AS1Q8NCQ2 148 aa11.52□□□□□ -0.57
CLN3-201ENST00000333496 IL17DQ8TAD2 202 aa11.52□□□□□ -0.57
CLN3-201ENST00000333496 PSMG3Q9BT73 122 aaPredicted RBP11.52□□□□□ -0.57
CLN3-201ENST00000333496 RFNGQ9Y644 331 aa11.52□□□□□ -0.57
CLN3-201ENST00000333496 TRAV8-2A0A0B4J237 113 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 C7orf77A4D0Y5 90 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 F6UB75 175 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 M0R036 132 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 RPL7P18124 248 aaKnown RBP11.51□□□□□ -0.57
CLN3-201ENST00000333496 SOHLH1Q5JUK2 328 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 IGFL4Q6B9Z1 124 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 FOXI2Q6ZQN5 318 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 CLEC5AQ9NY25 188 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 SACSQ9NZJ4 4579 aa11.51□□□□□ -0.57
CLN3-201ENST00000333496 TRAV1-1A0A0B4J248 108 aa11.5□□□□□ -0.57
CLN3-201ENST00000333496 FGF7P21781 194 aa11.5□□□□□ -0.57
CLN3-201ENST00000333496 RAB31Q13636 194 aa11.5□□□□□ -0.57
CLN3-201ENST00000333496 TMEM41BQ5BJD5 291 aa11.5□□□□□ -0.57
CLN3-201ENST00000333496 SAMD13Q5VXD3 122 aa11.5□□□□□ -0.57
CLN3-201ENST00000333496 ELOA3CA0A087WX78 387 aaPredicted RBP11.49□□□□□ -0.57
CLN3-201ENST00000333496 A0A087X0K7 114 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 C1orf196B1AJZ1 125 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 COX7A2P2O60397 106 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 RPL29P47914 159 aaKnown RBP11.49□□□□□ -0.57
CLN3-201ENST00000333496 ZNF506Q5JVG8 444 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 LINC00518Q8N0U6 118 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 DNAJC4Q9NNZ3 241 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 RPRMQ9NS64 109 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 TIMM9Q9Y5J7 89 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 RYR3Q15413 4870 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 A0A0J9YX75 114 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 IGKV3-20P01619 116 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 B2MP61769 119 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 C10orf113Q5VZT2 155 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 S100A7AQ86SG5 101 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 RNF182Q8N6D2 247 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 OR10G4Q8NGN3 311 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 HIST1H2BAQ96A08 127 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 CLUHP3Q96NS8 147 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 SLC39A9Q9NUM3 307 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 XCL2Q9UBD3 114 aa11.49□□□□□ -0.57
CLN3-201ENST00000333496 PLECQ15149 4684 aaKnown RBP11.48□□□□□ -0.57
CLN3-201ENST00000333496 MPDU1O75352 247 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 HLA-DMBP28068 263 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 NUTF2P61970 127 aaKnown RBP11.48□□□□□ -0.57
CLN3-201ENST00000333496 SERF2P84101 59 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 KHDC3LQ587J8 217 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 FAM78BQ5VT40 261 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 ZNF709Q8N972 641 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 Q8NAQ8 132 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 NPCDR1Q9BY65 106 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 PXMP4Q9Y6I8 212 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 X6R8D5 127 aa11.48□□□□□ -0.57
CLN3-201ENST00000333496 DEFB4AO15263 64 aa11.47□□□□□ -0.57
CLN3-201ENST00000333496 SNRPCP09234 159 aaKnown RBP11.47□□□□□ -0.57
CLN3-201ENST00000333496 FXYD7P58549 80 aa11.47□□□□□ -0.57
CLN3-201ENST00000333496 SPATA31B1PQ5VZV4 182 aa11.47□□□□□ -0.57
CLN3-201ENST00000333496 OR4B1Q8NGF8 309 aa11.47□□□□□ -0.57
CLN3-201ENST00000333496 C11orf68Q9H3H3 251 aaKnown RBP11.47□□□□□ -0.57
CLN3-201ENST00000333496 RNF24Q9Y225 148 aa11.47□□□□□ -0.57
CLN3-201ENST00000333496 A0A087WWC5 75 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 TRAV5A0A0B4J249 113 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 A0A1B0GV50 99 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 A8MTW9 85 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 C17orf112F2Z3M2 114 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 SRP19P09132 144 aaKnown RBP11.46□□□□□ -0.57
CLN3-201ENST00000333496 ICAM4Q14773 271 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 EBLN2Q6P2I7 272 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 OR1L4Q8NGR5 311 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 SFT2D1Q8WV19 159 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 C1QTNF4Q9BXJ3 329 aa11.46□□□□□ -0.57
CLN3-201ENST00000333496 RBMY1A1P0DJD3 496 aaKnown RBP11.46□□□□□ -0.58
CLN3-201ENST00000333496 RBMY1CP0DJD4 496 aa11.46□□□□□ -0.58
CLN3-201ENST00000333496 RBMY1FQ15415 496 aaKnown RBP11.46□□□□□ -0.58
CLN3-201ENST00000333496 BPIFA4PQ86YQ2 179 aa11.46□□□□□ -0.58
CLN3-201ENST00000333496 PFDN5Q99471 154 aa11.46□□□□□ -0.58
CLN3-201ENST00000333496 LOC102723971A0A1B0GUV8 181 aa11.45□□□□□ -0.58
CLN3-201ENST00000333496 ZNF705DP0CH99 300 aaPredicted RBP11.45□□□□□ -0.58
CLN3-201ENST00000333496 ZNF705BP0CI00 300 aaPredicted RBP11.45□□□□□ -0.58
CLN3-201ENST00000333496 IGLC2P0DOY2 106 aa11.45□□□□□ -0.58
CLN3-201ENST00000333496 CCL20P78556 96 aa11.45□□□□□ -0.58
CLN3-201ENST00000333496 PMS2P11Q13670 270 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms