RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CBY3A6NI87 242 aa12.52□□□□□ -0.41
HDDC3-201ENST00000330334 FAM3BP58499 235 aaPredicted RBP12.52□□□□□ -0.41
HDDC3-201ENST00000330334 ODF3Q96PU9 254 aa12.52□□□□□ -0.41
HDDC3-201ENST00000330334 TMEM14CQ9P0S9 112 aa12.52□□□□□ -0.41
HDDC3-201ENST00000330334 TIMM8BQ9Y5J9 83 aaPredicted RBP12.52□□□□□ -0.41
HDDC3-201ENST00000330334 TRAV5A0A0B4J249 113 aa12.51□□□□□ -0.41
HDDC3-201ENST00000330334 UBE2L5PA0A1B0GUS4 154 aa12.51□□□□□ -0.41
HDDC3-201ENST00000330334 PRAC2D3DTV9 90 aa12.51□□□□□ -0.41
HDDC3-201ENST00000330334 UPK1BO75841 260 aa12.51□□□□□ -0.41
HDDC3-201ENST00000330334 SNRPCP09234 159 aaKnown RBP12.51□□□□□ -0.41
HDDC3-201ENST00000330334 BAXQ07812 192 aa12.51□□□□□ -0.41
HDDC3-201ENST00000330334 UBE2DNLQ8IWF7 75 aa12.51□□□□□ -0.41
HDDC3-201ENST00000330334 RNASE8Q8TDE3 154 aaKnown RBP12.51□□□□□ -0.41
HDDC3-201ENST00000330334 TMEM263Q8WUH6 116 aaKnown RBP12.51□□□□□ -0.41
HDDC3-201ENST00000330334 MRPL53Q96EL3 112 aaKnown RBP12.51□□□□□ -0.41
HDDC3-201ENST00000330334 H3BTX0 84 aa12.5□□□□□ -0.41
HDDC3-201ENST00000330334 DEFB130BP0DP73 79 aa12.5□□□□□ -0.41
HDDC3-201ENST00000330334 DEFB130AP0DP74 79 aa12.5□□□□□ -0.41
HDDC3-201ENST00000330334 Q6ZR54 194 aa12.5□□□□□ -0.41
HDDC3-201ENST00000330334 ENKURQ8TC29 256 aa12.5□□□□□ -0.41
HDDC3-201ENST00000330334 NMES1Q9C002 83 aa12.5□□□□□ -0.41
HDDC3-201ENST00000330334 ZNF586Q9NXT0 402 aa12.5□□□□□ -0.41
HDDC3-201ENST00000330334 TRBV19A0A075B6N1 114 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 NPIPB6E9PJ23 425 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 PRAF2O60831 178 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 RLN2P04090 185 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 ATP5G1P05496 136 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 FGF7P21781 194 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 ATP5G3P48201 142 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 CYCSP99999 105 aaKnown RBP12.49□□□□□ -0.41
HDDC3-201ENST00000330334 PDE6HQ13956 83 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 SLC25A31Q9H0C2 315 aa12.49□□□□□ -0.41
HDDC3-201ENST00000330334 A6NHS1 94 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 E5RGE8 158 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 RTL8CO15255 209 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 CT45A10P0DMU9 189 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 HIST1H1EP10412 219 aaKnown RBP12.48□□□□□ -0.41
HDDC3-201ENST00000330334 HTN1P15515 57 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 KIR3DS1Q14943 382 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 FCN2Q15485 313 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 GFI1BQ5VTD9 330 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 NPCDR1Q9BY65 106 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 PRELID1Q9Y255 219 aa12.48□□□□□ -0.41
HDDC3-201ENST00000330334 A0A1B0GVY2 172 aa12.47□□□□□ -0.41
HDDC3-201ENST00000330334 M0R2N4 97 aa12.47□□□□□ -0.41
HDDC3-201ENST00000330334 PRB4P10163 310 aaPredicted RBP12.47□□□□□ -0.41
HDDC3-201ENST00000330334 LEPP41159 167 aa12.47□□□□□ -0.41
HDDC3-201ENST00000330334 NHLH2Q02577 135 aa12.47□□□□□ -0.41
HDDC3-201ENST00000330334 CCDC28AQ8IWP9 274 aa12.47□□□□□ -0.41
HDDC3-201ENST00000330334 LINC00612Q8N6U2 182 aa12.47□□□□□ -0.41
HDDC3-201ENST00000330334 HERC2O95714 4834 aa12.47□□□□□ -0.41
HDDC3-201ENST00000330334 F5H768 121 aa12.46□□□□□ -0.41
HDDC3-201ENST00000330334 NDUFB4O95168 129 aa12.46□□□□□ -0.41
HDDC3-201ENST00000330334 IFITM3Q01628 133 aa12.46□□□□□ -0.41
HDDC3-201ENST00000330334 OR5C1Q8NGR4 320 aa12.46□□□□□ -0.41
HDDC3-201ENST00000330334 NOP10Q9NPE3 64 aaKnown RBP12.46□□□□□ -0.41
HDDC3-201ENST00000330334 PTTG2Q9NZH5 202 aa12.46□□□□□ -0.41
HDDC3-201ENST00000330334 PRSS29PA6NIE9 313 aa12.45□□□□□ -0.42
HDDC3-201ENST00000330334 INMT-MINDY4F8WBC2 141 aa12.45□□□□□ -0.42
HDDC3-201ENST00000330334 LINC00477Q96M19 166 aa12.45□□□□□ -0.42
HDDC3-201ENST00000330334 PYGO2Q9BRQ0 406 aa12.45□□□□□ -0.42
HDDC3-201ENST00000330334 MARVELD1Q9BSK0 173 aa12.45□□□□□ -0.42
HDDC3-201ENST00000330334 PARD6GQ9BYG4 376 aaPredicted RBP12.45□□□□□ -0.42
HDDC3-201ENST00000330334 PKHD1P08F94 4074 aa12.45□□□□□ -0.42
HDDC3-201ENST00000330334 H0YIZ8 118 aa12.44□□□□□ -0.42
HDDC3-201ENST00000330334 SIX6O95475 246 aa12.44□□□□□ -0.42
HDDC3-201ENST00000330334 SLC25A5P05141 298 aaKnown RBP12.44□□□□□ -0.42
HDDC3-201ENST00000330334 KCNIP2Q9NS61 270 aa12.44□□□□□ -0.42
HDDC3-201ENST00000330334 OR5AC2Q9NZP5 309 aa12.44□□□□□ -0.42
HDDC3-201ENST00000330334 TIMM9Q9Y5J7 89 aa12.44□□□□□ -0.42
HDDC3-201ENST00000330334 IGLV2-18A0A075B6J9 118 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 M0R3E3 92 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 NMBP08949 121 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 DAZ2Q13117 558 aaKnown RBP12.43□□□□□ -0.42
HDDC3-201ENST00000330334 GCSAMLQ5JQS6 135 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 SOHLH1Q5JUK2 328 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 FAM167A-AS1Q96KT0 104 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 FAM19A4Q96LR4 140 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 LINC00467Q9BRT7 94 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 ATG101Q9BSB4 218 aa12.43□□□□□ -0.42
HDDC3-201ENST00000330334 TRAV12-3A0A0B4J271 114 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 KLLNB2CW77 178 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 PYYP10082 97 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 H2BFSP57053 126 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 C9orf47Q6ZRZ4 202 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 THAP6Q8TBB0 222 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 ZNF503Q96F45 646 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 SLC25A2Q9BXI2 301 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 WDR61Q9GZS3 305 aaKnown RBP12.42□□□□□ -0.42
HDDC3-201ENST00000330334 AAMDCQ9H7C9 122 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 PKD1P98161 4303 aa12.42□□□□□ -0.42
HDDC3-201ENST00000330334 SNURFLB1AK76 121 aa12.41□□□□□ -0.42
HDDC3-201ENST00000330334 ZNF324O75467 553 aaPredicted RBP12.41□□□□□ -0.42
HDDC3-201ENST00000330334 NBEAP1P0C6P0 100 aa12.41□□□□□ -0.42
HDDC3-201ENST00000330334 CCL18P55774 89 aa12.41□□□□□ -0.42
HDDC3-201ENST00000330334 LRRC37A5PQ49AS3 106 aa12.41□□□□□ -0.42
HDDC3-201ENST00000330334 PPP1R1CQ8WVI7 109 aa12.41□□□□□ -0.42
HDDC3-201ENST00000330334 MRPL32Q9BYC8 188 aaKnown RBP12.41□□□□□ -0.42
HDDC3-201ENST00000330334 AGPAT4-IT1Q9H0P7 198 aa12.41□□□□□ -0.42
HDDC3-201ENST00000330334 KIAA1109Q2LD37 5005 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms