RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ARPC1AQ92747 370 aa17.21■□□□□ 0.34
SHMT1-201ENST00000316694 F8W735 103 aaPredicted RBP17.2■□□□□ 0.34
SHMT1-201ENST00000316694 SNAI2O43623 268 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 NDPQ00604 133 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 C12orf54Q6X4T0 127 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 ZNF493Q6ZR52 646 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 OR4C5Q8NGB2 326 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 C21orf62Q9NYP8 219 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 IGHV2-70DA0A0C4DH43 119 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 OR2T8A6NH00 312 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 CDSNQ15517 529 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 RNASE8Q8TDE3 154 aaKnown RBP17.2■□□□□ 0.34
SHMT1-201ENST00000316694 SIGLEC8Q9NYZ4 499 aa17.2■□□□□ 0.34
SHMT1-201ENST00000316694 IGF2RP11717 2491 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 TAX1BP3O14907 124 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 PRELID3AQ96N28 172 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 HRNRQ86YZ3 2850 aaPredicted RBP17.19■□□□□ 0.34
SHMT1-201ENST00000316694 ASH1LQ9NR48 2969 aaKnown RBP17.19■□□□□ 0.34
SHMT1-201ENST00000316694 NPIPB5A8MRT5 1133 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 FXYD7P58549 80 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 PSG9Q00887 426 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 IGFL4Q6B9Z1 124 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 Q8TAT8 98 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 TIMD4Q96H15 378 aa17.19■□□□□ 0.34
SHMT1-201ENST00000316694 ATRXP46100 2492 aa17.18■□□□□ 0.34
SHMT1-201ENST00000316694 WNK2Q9Y3S1 2297 aa17.18■□□□□ 0.34
SHMT1-201ENST00000316694 LOC105371242A0A075B767 164 aa17.18■□□□□ 0.34
SHMT1-201ENST00000316694 IGHV3OR16-8A0A075B7F1 116 aa17.18■□□□□ 0.34
SHMT1-201ENST00000316694 CBY3A6NI87 242 aa17.18■□□□□ 0.34
SHMT1-201ENST00000316694 FAM104BQ5XKR9 115 aa17.18■□□□□ 0.34
SHMT1-201ENST00000316694 ZNF562Q6V9R5 426 aa17.18■□□□□ 0.34
SHMT1-201ENST00000316694 A0A096LNJ9 63 aa17.17■□□□□ 0.34
SHMT1-201ENST00000316694 ORMDL3Q8N138 153 aa17.17■□□□□ 0.34
SHMT1-201ENST00000316694 ODF3BA8MYP8 253 aa17.16■□□□□ 0.34
SHMT1-201ENST00000316694 HIST1H1AQ02539 215 aaPredicted RBP17.16■□□□□ 0.34
SHMT1-201ENST00000316694 IGHV3-35A0A0C4DH35 117 aa17.16■□□□□ 0.34
SHMT1-201ENST00000316694 RPL7P18124 248 aaKnown RBP17.16■□□□□ 0.34
SHMT1-201ENST00000316694 DYNAPQ8N1N2 210 aa17.16■□□□□ 0.34
SHMT1-201ENST00000316694 DEFB125Q8N687 156 aa17.16■□□□□ 0.34
SHMT1-201ENST00000316694 PRR25Q96S07 402 aa17.16■□□□□ 0.34
SHMT1-201ENST00000316694 CCL21O00585 134 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 COX8AP10176 69 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 EGR2P11161 476 aaPredicted RBP17.15■□□□□ 0.34
SHMT1-201ENST00000316694 PRTN3P24158 256 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 GPR183P32249 361 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 FOXE3Q13461 319 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 TWIST1Q15672 202 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 C21orf62-AS1Q17RA5 79 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 MRPL51Q4U2R6 128 aaKnown RBP17.15■□□□□ 0.34
SHMT1-201ENST00000316694 SAPCD1Q5SSQ6 148 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 TTC9CQ8N5M4 171 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 ZNF48Q96MX3 618 aaPredicted RBP17.15■□□□□ 0.34
SHMT1-201ENST00000316694 VGLL1Q99990 258 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 THYN1Q9P016 225 aa17.15■□□□□ 0.34
SHMT1-201ENST00000316694 SMKR1H3BMG3 65 aa17.14■□□□□ 0.34
SHMT1-201ENST00000316694 M0R1W7 72 aa17.14■□□□□ 0.34
SHMT1-201ENST00000316694 HLA-DMBP28068 263 aa17.14■□□□□ 0.34
SHMT1-201ENST00000316694 ZNF80P51504 273 aaPredicted RBP17.14■□□□□ 0.33
SHMT1-201ENST00000316694 TCTAP57738 103 aa17.14■□□□□ 0.33
SHMT1-201ENST00000316694 U3KQK5 164 aa17.14■□□□□ 0.33
SHMT1-201ENST00000316694 NHLH1Q02575 133 aa17.13■□□□□ 0.33
SHMT1-201ENST00000316694 MED13LQ71F56 2210 aa17.13■□□□□ 0.33
SHMT1-201ENST00000316694 VMO1Q7Z5L0 202 aa17.13■□□□□ 0.33
SHMT1-201ENST00000316694 RABAC1Q9UI14 185 aa17.13■□□□□ 0.33
SHMT1-201ENST00000316694 CTSGP08311 255 aa17.12■□□□□ 0.33
SHMT1-201ENST00000316694 CKS2P33552 79 aa17.12■□□□□ 0.33
SHMT1-201ENST00000316694 RHOGP84095 191 aa17.12■□□□□ 0.33
SHMT1-201ENST00000316694 C2orf91Q6ZV80 131 aa17.12■□□□□ 0.33
SHMT1-201ENST00000316694 FER1L6-AS1Q8NA97 138 aa17.12■□□□□ 0.33
SHMT1-201ENST00000316694 SMAD5-AS1Q9Y6J3 95 aa17.12■□□□□ 0.33
SHMT1-201ENST00000316694 ANKRD39Q53RE8 183 aa17.11■□□□□ 0.33
SHMT1-201ENST00000316694 K7EP13 123 aa17.11■□□□□ 0.33
SHMT1-201ENST00000316694 CACNG7P62955 275 aa17.11■□□□□ 0.33
SHMT1-201ENST00000316694 CCDC144NLQ6NUI1 221 aa17.11■□□□□ 0.33
SHMT1-201ENST00000316694 PIP4P2Q8N4L2 257 aa17.11■□□□□ 0.33
SHMT1-201ENST00000316694 COL6A6A6NMZ7 2263 aa17.11■□□□□ 0.33
SHMT1-201ENST00000316694 NPYP01303 97 aa17.1■□□□□ 0.33
SHMT1-201ENST00000316694 TMEM11P17152 192 aa17.1■□□□□ 0.33
SHMT1-201ENST00000316694 PCP4P48539 62 aa17.1■□□□□ 0.33
SHMT1-201ENST00000316694 FBXL19-AS1Q494R0 122 aa17.1■□□□□ 0.33
SHMT1-201ENST00000316694 AMMECR1LQ6DCA0 310 aa17.1■□□□□ 0.33
SHMT1-201ENST00000316694 CACNA1BQ00975 2339 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 IGHG4P01861 327 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 HBDP02042 147 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 ORM1P02763 201 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 BMI1P35226 326 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 RBX1P62877 108 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 CD5LO43866 347 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 SCGB2A1O75556 95 aa17.09■□□□□ 0.33
SHMT1-201ENST00000316694 COX8CQ7Z4L0 72 aa17.08■□□□□ 0.33
SHMT1-201ENST00000316694 MSRB1Q9NZV6 116 aa17.08■□□□□ 0.33
SHMT1-201ENST00000316694 RPS20P60866 119 aaKnown RBP17.08■□□□□ 0.32
SHMT1-201ENST00000316694 ADORA2A-AS1P86434 159 aa17.08■□□□□ 0.32
SHMT1-201ENST00000316694 WFDC3Q8IUB2 231 aa17.08■□□□□ 0.32
SHMT1-201ENST00000316694 Q8N6K4 173 aa17.08■□□□□ 0.32
SHMT1-201ENST00000316694 SPTBN1Q01082 2364 aaKnown RBP17.07■□□□□ 0.32
SHMT1-201ENST00000316694 IGHV7-81A0A0B4J1V7 117 aa17.07■□□□□ 0.32
SHMT1-201ENST00000316694 ERCC8Q13216 396 aa17.07■□□□□ 0.32
SHMT1-201ENST00000316694 LGALS9BQ3B8N2 356 aa17.07■□□□□ 0.32
SHMT1-201ENST00000316694 LGALS9CQ6DKI2 356 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms