RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 RPL7P18124 248 aaKnown RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 ATP5G3P48201 142 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 DEFB131AP59861 70 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 KHDC3LQ587J8 217 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 PXDC1Q5TGL8 231 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 GDF5OSQ5U4N7 250 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 LCN12Q6JVE5 192 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 RBPMS2Q6ZRY4 209 aaKnown RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 DEFB125Q8N687 156 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 SFT2D1Q8WV19 159 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 LINC00052Q96N35 136 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 MCRIP2Q9BUT9 160 aaKnown RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 OR51M1Q9H341 326 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 TMEM231Q9H6L2 316 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 AURKAIP1Q9NWT8 199 aaPredicted RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 C11orf21Q9P2W6 132 aa4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF256Q9Y2P7 627 aaPredicted RBP4.82□□□□□ -1.64
DEPDC4-201ENST00000299185 TRBV19A0A075B6N1 114 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 A0A087X0K7 114 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 A0A1W2PS18 150 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 HELTA6NFD8 242 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 GGTLC3B5MD39 225 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 K7EIL1 84 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 DNASE2O00115 360 aaPredicted RBP4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 TSPAN4O14817 238 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 IGKV3-20P01619 116 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 NMBP08949 121 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 RPL35AP18077 110 aaKnown RBP4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 FXYD7P58549 80 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 SERF2P84101 59 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 BPIFA4PQ86YQ2 179 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF738Q8NE65 137 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 LRRC20Q8TCA0 184 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 C16orf92Q96LL3 132 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 SGK494Q96LW2 274 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 SPAG8Q99932 426 aaPredicted RBP4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 Q9H3A6 140 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 HRH4Q9H3N8 390 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 RETNQ9HD89 108 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 NRN1Q9NPD7 142 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 SIGLEC8Q9NYZ4 499 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 TMEM14CQ9P0S9 112 aa4.81□□□□□ -1.64
DEPDC4-201ENST00000299185 OR4C46A6NHA9 309 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 UMAD1C9J7I0 102 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 CXorf1O96002 111 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 MBP02144 154 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 HIST1H1EP10412 219 aaKnown RBP4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 BMI1P35226 326 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 RAB5CP51148 216 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 TAS2R45P59539 299 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 RAB14P61106 215 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 RANP62826 216 aaKnown RBP4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 DEFA6Q01524 100 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 HIST1H1AQ02539 215 aaPredicted RBP4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 EGFEM1PQ0D2K5 195 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 ERCC8Q13216 396 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 ICAM4Q14773 271 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 HAGHQ16775 308 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 C1orf194Q5T5A4 169 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF575Q86XF7 245 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 Q8TAT8 98 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 SAT2Q96F10 170 aaPredicted RBP4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 SRD5A3Q9H8P0 318 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 ZNF331Q9NQX6 463 aaPredicted RBP4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 GNG13Q9P2W3 67 aa4.8□□□□□ -1.64
DEPDC4-201ENST00000299185 TRAV8-1A0A0A6YYK1 113 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 TRAV25A0A0B4J276 109 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 J3KRW8 73 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 PAGE4O60829 102 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 NBEAP1P0C6P0 100 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 PSMB3P49720 205 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 TOR2AQ5JU69 321 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 ACTL10Q5JWF8 245 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 CLLU1Q5K131 121 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 KPRPQ5T749 579 aaPredicted RBP4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 PQLC2Q6ZP29 291 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 OR2K2Q8NGT1 345 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 MBD3L1Q8WWY6 194 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 GPR61Q9BZJ8 451 aa4.79□□□□□ -1.64
DEPDC4-201ENST00000299185 TRRAPQ9Y4A5 3859 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 TRAV34A0A0B4J273 112 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 LOC102723971A0A1B0GUV8 181 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 FAM74A7A6NL05 159 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 OR11H12B2RN74 326 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 SLC25A5P05141 298 aaKnown RBP4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 INSL3P51460 131 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 BLOC1S1P78537 153 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 PSG3Q16557 428 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 NDUFA5Q16718 116 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 PRR9Q5T870 116 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 CST9LP1Q5W188 147 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 DPPA3Q6W0C5 159 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 Q6ZQT7 251 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 GOLT1AQ6ZVE7 132 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 RXFP4Q8TDU9 374 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 RPUSD4Q96CM3 377 aaKnown RBP4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 GPR82Q96P67 336 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 RARRES2Q99969 163 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 VGLL1Q99990 258 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 SLC50A1Q9BRV3 221 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 238.9 ms