RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 C1orf194Q5T5A4 169 aa14.85□□□□□ -0.03
PCDH1-201ENST00000287008 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.85□□□□□ -0.03
PCDH1-201ENST00000287008 MORN3Q6PF18 240 aaPredicted RBP14.85□□□□□ -0.03
PCDH1-201ENST00000287008 NDUFA4O00483 81 aa14.85□□□□□ -0.03
PCDH1-201ENST00000287008 CD300EQ496F6 205 aaPredicted RBP14.85□□□□□ -0.03
PCDH1-201ENST00000287008 DKK4Q9UBT3 224 aa14.85□□□□□ -0.03
PCDH1-201ENST00000287008 A0A1B0GW64 132 aa14.84□□□□□ -0.03
PCDH1-201ENST00000287008 MYO9AB2RTY4 2548 aa14.84□□□□□ -0.03
PCDH1-201ENST00000287008 ARMS2P0C7Q2 107 aa14.84□□□□□ -0.03
PCDH1-201ENST00000287008 LINC00158P58513 81 aa14.84□□□□□ -0.03
PCDH1-201ENST00000287008 SPINK13Q1W4C9 94 aa14.84□□□□□ -0.03
PCDH1-201ENST00000287008 SRSF4Q08170 494 aaKnown RBP14.83□□□□□ -0.03
PCDH1-201ENST00000287008 E9PQ18 207 aa14.83□□□□□ -0.04
PCDH1-201ENST00000287008 RASL11AQ6T310 242 aa14.83□□□□□ -0.04
PCDH1-201ENST00000287008 IGHV2-70P01814 119 aa14.83□□□□□ -0.04
PCDH1-201ENST00000287008 ERCC8Q13216 396 aa14.83□□□□□ -0.04
PCDH1-201ENST00000287008 DYSFO75923 2080 aa14.83□□□□□ -0.04
PCDH1-201ENST00000287008 RHODO00212 210 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 DEFB112Q30KQ8 113 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 TEX43Q6ZNM6 134 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 WT1-ASQ06250 92 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 Q86TA4 180 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 LIME1Q9H400 295 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 VPREB3Q9UKI3 123 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 ZNF815PA8K554 130 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 IGKCP01834 107 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 LINC00518Q8N0U6 118 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 NAV3Q8IVL0 2385 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 IGHV4-61A0A0C4DH41 118 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BKO60814 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BJP06899 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BOP23527 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BBP33778 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BDP58876 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BCP62807 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST2H2BEQ16778 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BHQ93079 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BNQ99877 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 HIST1H2BMQ99879 126 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 SMPXQ9UHP9 88 aa14.82□□□□□ -0.04
PCDH1-201ENST00000287008 A0A087WWL8 130 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 DKK1O94907 266 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 ZNF134P52741 427 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 DAD1P61803 113 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 MRPL27Q9P0M9 148 aaKnown RBP14.81□□□□□ -0.04
PCDH1-201ENST00000287008 LSM4Q9Y4Z0 139 aaKnown RBP14.81□□□□□ -0.04
PCDH1-201ENST00000287008 TPSG1Q9NRR2 321 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 CTSZQ9UBR2 303 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 TRAV2A0A0B4J234 112 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 F5H768 121 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 FAM90A2PQ658T7 463 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 NUP35Q8NFH5 326 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 RNF138Q8WVD3 245 aa14.81□□□□□ -0.04
PCDH1-201ENST00000287008 LYL1P12980 280 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 DEFB104AQ8WTQ1 72 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 IGHV4-59P01825 116 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 LINC00479Q96M42 142 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 CSTL1Q9H114 145 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 ANAPC10Q9UM13 185 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 PLXNA2O75051 1894 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 PLXND1Q9Y4D7 1925 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 IGHV3-64A0A075B6Q5 118 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 LINC00587B1AMM8 73 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 MS4A6AQ9H2W1 248 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 IGLV3-1P01715 115 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 DIAPH2-AS1Q14236 149 aa14.8□□□□□ -0.04
PCDH1-201ENST00000287008 FRMPD3Q5JV73 1810 aa14.79□□□□□ -0.04
PCDH1-201ENST00000287008 TRAV9-2A0A087WT02 112 aa14.79□□□□□ -0.04
PCDH1-201ENST00000287008 PHLDA1Q8WV24 401 aaPredicted RBP14.79□□□□□ -0.04
PCDH1-201ENST00000287008 C6orf226Q5I0X4 101 aa14.79□□□□□ -0.04
PCDH1-201ENST00000287008 JPT2Q9H910 190 aa14.79□□□□□ -0.04
PCDH1-201ENST00000287008 S100A7L2Q5SY68 101 aa14.79□□□□□ -0.04
PCDH1-201ENST00000287008 SPRY4Q9C004 299 aa14.79□□□□□ -0.04
PCDH1-201ENST00000287008 KNCNA6PVL3 124 aa14.78□□□□□ -0.04
PCDH1-201ENST00000287008 APOC4P55056 127 aa14.78□□□□□ -0.04
PCDH1-201ENST00000287008 PIEZO2Q9H5I5 2752 aa14.78□□□□□ -0.04
PCDH1-201ENST00000287008 NUP210Q8TEM1 1887 aaPredicted RBP14.78□□□□□ -0.04
PCDH1-201ENST00000287008 TRBV19A0A075B6N1 114 aa14.78□□□□□ -0.04
PCDH1-201ENST00000287008 IGHV4-30-2A0A087WSY4 118 aa14.78□□□□□ -0.04
PCDH1-201ENST00000287008 A0A1W2PNU3 283 aaPredicted RBP14.78□□□□□ -0.04
PCDH1-201ENST00000287008 C8orf86Q6ZUL3 223 aa14.78□□□□□ -0.04
PCDH1-201ENST00000287008 IGKV1-39P01597 117 aa14.77□□□□□ -0.04
PCDH1-201ENST00000287008 IGKV1D-39P04432 117 aa14.77□□□□□ -0.04
PCDH1-201ENST00000287008 ADORA2A-AS1P86434 159 aa14.77□□□□□ -0.04
PCDH1-201ENST00000287008 PGPEP1Q9NXJ5 209 aa14.77□□□□□ -0.04
PCDH1-201ENST00000287008 NHP2Q9NX24 153 aaKnown RBP14.77□□□□□ -0.04
PCDH1-201ENST00000287008 A0A1B0GWB2 263 aa14.77□□□□□ -0.05
PCDH1-201ENST00000287008 RASL10AQ92737 203 aa14.77□□□□□ -0.05
PCDH1-201ENST00000287008 FREM1Q5H8C1 2179 aa14.77□□□□□ -0.05
PCDH1-201ENST00000287008 TRAV13-1A0A0B4J241 112 aa14.77□□□□□ -0.05
PCDH1-201ENST00000287008 C11orf68Q9H3H3 251 aaKnown RBP14.76□□□□□ -0.05
PCDH1-201ENST00000287008 POU2AF1Q16633 256 aa14.76□□□□□ -0.05
PCDH1-201ENST00000287008 AMN1Q8IY45 258 aa14.76□□□□□ -0.05
PCDH1-201ENST00000287008 PRR31Q5SQ13 230 aa14.76□□□□□ -0.05
PCDH1-201ENST00000287008 TLN1Q9Y490 2541 aaKnown RBP14.76□□□□□ -0.05
PCDH1-201ENST00000287008 IGHV4-39P01824 125 aa14.76□□□□□ -0.05
PCDH1-201ENST00000287008 PFN1P07737 140 aaKnown RBP14.76□□□□□ -0.05
PCDH1-201ENST00000287008 FAM120AOSQ5T036 256 aa14.76□□□□□ -0.05
PCDH1-201ENST00000287008 PLEKHB2Q96CS7 222 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 429.5 ms