RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 IGKV3OR2-268A0A0C4DH90 116 aa13.33□□□□□ -0.28
PHRF1-201ENST00000264555 SMIM27A0A1W2PRY6 76 aa13.33□□□□□ -0.28
PHRF1-201ENST00000264555 SYS1-DBNDD2H3BUS1 97 aa13.33□□□□□ -0.28
PHRF1-201ENST00000264555 PCP4P48539 62 aa13.33□□□□□ -0.28
PHRF1-201ENST00000264555 ZNF664Q8N3J9 261 aa13.33□□□□□ -0.28
PHRF1-201ENST00000264555 OVOL3O00110 214 aa13.33□□□□□ -0.28
PHRF1-201ENST00000264555 IGLV2-14P01704 120 aa13.33□□□□□ -0.28
PHRF1-201ENST00000264555 MALRD1Q5VYJ5 2156 aa13.32□□□□□ -0.28
PHRF1-201ENST00000264555 FCN3O75636 299 aa13.32□□□□□ -0.28
PHRF1-201ENST00000264555 C18orf32Q8TCD1 76 aa13.32□□□□□ -0.28
PHRF1-201ENST00000264555 JKAMPQ9P055 326 aa13.32□□□□□ -0.28
PHRF1-201ENST00000264555 DMRTA1Q5VZB9 504 aa13.32□□□□□ -0.28
PHRF1-201ENST00000264555 ZGRF1Q86YA3 2104 aa13.31□□□□□ -0.28
PHRF1-201ENST00000264555 SP5Q6BEB4 398 aaPredicted RBP13.31□□□□□ -0.28
PHRF1-201ENST00000264555 WISP2O76076 250 aa13.31□□□□□ -0.28
PHRF1-201ENST00000264555 C5orf30Q96GV9 206 aa13.31□□□□□ -0.28
PHRF1-201ENST00000264555 TMEM262E9PQX1 116 aa13.31□□□□□ -0.28
PHRF1-201ENST00000264555 SSBP2P81877 361 aaPredicted RBP13.31□□□□□ -0.28
PHRF1-201ENST00000264555 C11orf44Q8N8P7 122 aa13.31□□□□□ -0.28
PHRF1-201ENST00000264555 OR11H6Q8NGC7 330 aa13.31□□□□□ -0.28
PHRF1-201ENST00000264555 TRAV12-3A0A0B4J271 114 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 ARL6IP6Q8N6S5 226 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 NCOA6Q14686 2063 aaPredicted RBP13.3□□□□□ -0.28
PHRF1-201ENST00000264555 CRIP3Q6Q6R5 217 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 RNF182Q8N6D2 247 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 MRAP2Q96G30 205 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 C8orf49Q96NF6 230 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 A0A1B0GUS0 222 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 PRSS46E5RG02 174 aa13.3□□□□□ -0.28
PHRF1-201ENST00000264555 CMC4P56277 68 aaPredicted RBP13.3□□□□□ -0.28
PHRF1-201ENST00000264555 IL17RELQ6ZVW7 336 aa13.29□□□□□ -0.28
PHRF1-201ENST00000264555 OR9G4Q8NGQ1 327 aa13.29□□□□□ -0.28
PHRF1-201ENST00000264555 DMRTC2Q8IXT2 367 aaPredicted RBP13.29□□□□□ -0.28
PHRF1-201ENST00000264555 ORAOV1Q8WV07 137 aa13.29□□□□□ -0.28
PHRF1-201ENST00000264555 SPCS1Q9Y6A9 102 aa13.29□□□□□ -0.28
PHRF1-201ENST00000264555 A8MWP6 167 aa13.29□□□□□ -0.28
PHRF1-201ENST00000264555 TDGF1P3P51864 188 aa13.29□□□□□ -0.28
PHRF1-201ENST00000264555 ZNF491Q8N8L2 437 aa13.29□□□□□ -0.28
PHRF1-201ENST00000264555 SEC11AP67812 179 aa13.28□□□□□ -0.28
PHRF1-201ENST00000264555 HSD52Q0P140 79 aa13.28□□□□□ -0.28
PHRF1-201ENST00000264555 CR1LQ2VPA4 569 aa13.28□□□□□ -0.28
PHRF1-201ENST00000264555 PRR25Q96S07 402 aa13.28□□□□□ -0.28
PHRF1-201ENST00000264555 GUSBP1Q15486 140 aa13.28□□□□□ -0.28
PHRF1-201ENST00000264555 C14orf178Q8N769 122 aaPredicted RBP13.28□□□□□ -0.28
PHRF1-201ENST00000264555 SMKR1H3BMG3 65 aa13.28□□□□□ -0.28
PHRF1-201ENST00000264555 H3BUT2 72 aa13.28□□□□□ -0.28
PHRF1-201ENST00000264555 hDV102S1A0JD36 115 aa13.27□□□□□ -0.28
PHRF1-201ENST00000264555 RNF223E7ERA6 249 aa13.27□□□□□ -0.28
PHRF1-201ENST00000264555 FXYD7P58549 80 aa13.27□□□□□ -0.28
PHRF1-201ENST00000264555 K7EN84 100 aa13.27□□□□□ -0.28
PHRF1-201ENST00000264555 FREM1Q5H8C1 2179 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 TMEM213A2RRL7 107 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 HOXB4P17483 251 aaPredicted RBP13.27□□□□□ -0.29
PHRF1-201ENST00000264555 MSMPQ1L6U9 139 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 C11orf1Q9H5F2 150 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 NDUFA4O00483 81 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 FAM104BQ5XKR9 115 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 OR2K2Q8NGT1 345 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 RCHY1Q96PM5 261 aa13.27□□□□□ -0.29
PHRF1-201ENST00000264555 SLAQ13239 276 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 MRPL52Q86TS9 123 aaKnown RBP13.26□□□□□ -0.29
PHRF1-201ENST00000264555 SPOCK3Q9BQ16 436 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 VCYO14598 125 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 EMP1P54849 157 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 NHP2Q9NX24 153 aaKnown RBP13.26□□□□□ -0.29
PHRF1-201ENST00000264555 APOMO95445 188 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 FAM120AOSQ5T036 256 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 C8orf86Q6ZUL3 223 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 BEX4Q9NWD9 120 aaPredicted RBP13.26□□□□□ -0.29
PHRF1-201ENST00000264555 SYNJ2BPP57105 145 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 LINC00469Q8N7U9 141 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 TMEM158Q8WZ71 300 aa13.26□□□□□ -0.29
PHRF1-201ENST00000264555 PTPRSQ13332 1948 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 NDUFS7O75251 213 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 CD28P10747 220 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 TNFRSF6BO95407 300 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 POLR3KQ9Y2Y1 108 aaPredicted RBP13.25□□□□□ -0.29
PHRF1-201ENST00000264555 MED13Q9UHV7 2174 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 LTAP01374 205 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 MRPS16Q9Y3D3 137 aaKnown RBP13.25□□□□□ -0.29
PHRF1-201ENST00000264555 ZNF815PA8K554 130 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 LCNL1Q6ZST4 164 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 GTSCR1Q86UQ5 136 aa13.25□□□□□ -0.29
PHRF1-201ENST00000264555 GOLGB1Q14789 3259 aaKnown RBP13.25□□□□□ -0.29
PHRF1-201ENST00000264555 PLNP26678 52 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 KLHL30-AS1Q8NEE0 82 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 J3QLI3 93 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 C20orf144Q9BQM9 153 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 ZNF415Q09FC8 603 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 Q6ZPA2 131 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 NPBQ8NG41 125 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 ZC2HC1AQ96GY0 325 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 CSTL1Q9H114 145 aa13.24□□□□□ -0.29
PHRF1-201ENST00000264555 SAP30O75446 220 aa13.23□□□□□ -0.29
PHRF1-201ENST00000264555 ODF3L1Q8IXM7 274 aa13.23□□□□□ -0.29
PHRF1-201ENST00000264555 NSUN5P1Q3KNT7 163 aa13.23□□□□□ -0.29
PHRF1-201ENST00000264555 TTC32Q5I0X7 151 aa13.23□□□□□ -0.29
PHRF1-201ENST00000264555 PCNX3Q9H6A9 2034 aa13.23□□□□□ -0.29
PHRF1-201ENST00000264555 CD300EQ496F6 205 aaPredicted RBP13.23□□□□□ -0.29
PHRF1-201ENST00000264555 ZNF876PQ49A33 203 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms