RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 IGHV4-39P01824 125 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 CNTFRP26992 372 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 MCRIP2Q9BUT9 160 aaKnown RBP13.39□□□□□ -0.27
FOXA1-201ENST00000250448 TMEM14CQ9P0S9 112 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 H0Y8G0 127 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 HOXB4P17483 251 aaPredicted RBP13.39□□□□□ -0.27
FOXA1-201ENST00000250448 RHOGP84095 191 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 C12orf54Q6X4T0 127 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 EXOC3-AS1Q8N2X6 119 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 BPESC1Q9GZL8 116 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 MS4A6AQ9H2W1 248 aa13.39□□□□□ -0.27
FOXA1-201ENST00000250448 MUC21A0A0G2JKD1 596 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 MUC21A0A140T8X8 626 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 OVOL3O00110 214 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 HLA-DRB1P01911 266 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 CSN3P07498 182 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 MUC21Q5SSG8 566 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 DEFB125Q8N687 156 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 TMEM133Q9H2Q1 129 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 F11RQ9Y624 299 aaKnown RBP13.38□□□□□ -0.27
FOXA1-201ENST00000250448 A0A1W2PRD5 423 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 A0A1W2PRF3 423 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 A0A1W2PRM7 423 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 CRYGBP07316 175 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 PSG1P11464 419 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 SLC25A39Q9BZJ4 359 aaPredicted RBP13.38□□□□□ -0.27
FOXA1-201ENST00000250448 A0A1B0GUT8 65 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 ZFP36P26651 326 aaKnown RBP13.38□□□□□ -0.27
FOXA1-201ENST00000250448 LINC01545Q5VT33 79 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 CCL19Q99731 98 aa13.38□□□□□ -0.27
FOXA1-201ENST00000250448 TRBV6-1A0A0K0K1D8 114 aa13.37□□□□□ -0.27
FOXA1-201ENST00000250448 IGLC1P0CG04 106 aa13.37□□□□□ -0.27
FOXA1-201ENST00000250448 LDLRAD2Q5SZI1 272 aa13.37□□□□□ -0.27
FOXA1-201ENST00000250448 SIGLEC9Q9Y336 463 aa13.37□□□□□ -0.27
FOXA1-201ENST00000250448 TIMM8BQ9Y5J9 83 aaPredicted RBP13.37□□□□□ -0.27
FOXA1-201ENST00000250448 ZNF479Q96JC4 524 aa13.37□□□□□ -0.27
FOXA1-201ENST00000250448 OR2T8A6NH00 312 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 ARMS2P0C7Q2 107 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 HIST1H1AQ02539 215 aaPredicted RBP13.36□□□□□ -0.27
FOXA1-201ENST00000250448 KLRD1Q13241 179 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 RIGQ13278 110 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 SRSF12Q8WXF0 261 aaKnown RBP13.36□□□□□ -0.27
FOXA1-201ENST00000250448 ZC2HC1AQ96GY0 325 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 PMCHL2Q9BQD1 86 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 DOPEY2Q9Y3R5 2298 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 ZNF785A8K8V0 405 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 TEX22C9J3V5 150 aa13.36□□□□□ -0.27
FOXA1-201ENST00000250448 GATD1Q8NB37 220 aa13.35□□□□□ -0.27
FOXA1-201ENST00000250448 AP5S1Q9NUS5 200 aa13.35□□□□□ -0.27
FOXA1-201ENST00000250448 ANKRD17O75179 2603 aaKnown RBP13.35□□□□□ -0.27
FOXA1-201ENST00000250448 RPS20P60866 119 aaKnown RBP13.35□□□□□ -0.27
FOXA1-201ENST00000250448 A0A087X0K7 114 aa13.34□□□□□ -0.27
FOXA1-201ENST00000250448 TMEM75Q8N9X5 138 aa13.34□□□□□ -0.27
FOXA1-201ENST00000250448 OCIAD2Q56VL3 154 aa13.34□□□□□ -0.27
FOXA1-201ENST00000250448 LY6G5BQ8NDX9 201 aa13.34□□□□□ -0.27
FOXA1-201ENST00000250448 RASL11BQ9BPW5 248 aa13.34□□□□□ -0.27
FOXA1-201ENST00000250448 ABCA2Q9BZC7 2435 aa13.34□□□□□ -0.27
FOXA1-201ENST00000250448 PPP1R27Q86WC6 154 aa13.34□□□□□ -0.27
FOXA1-201ENST00000250448 HELZ2Q9BYK8 2649 aaKnown RBP13.33□□□□□ -0.27
FOXA1-201ENST00000250448 CD5LO43866 347 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 RBP4P02753 201 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 FA2HQ7L5A8 372 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 ZNF747Q9BV97 191 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 I3L2K1 104 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 COX8AP10176 69 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 GPR183P32249 361 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 TMEM190Q8WZ59 177 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 ASCL2Q99929 193 aa13.33□□□□□ -0.28
FOXA1-201ENST00000250448 TRBV19A0A075B6N1 114 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 A0A1B0GW15 77 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 IGHV1-3A0A0C4DH29 117 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 IGLV1-47P01700 117 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 CSN1S1P47710 185 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 AMMECR1LQ6DCA0 310 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 C2orf91Q6ZV80 131 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 OR10AG1Q8NH19 301 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 FBXL15Q9H469 300 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 PSG8Q9UQ74 426 aa13.32□□□□□ -0.28
FOXA1-201ENST00000250448 IGKV1-17P01599 117 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 COX6B1P14854 86 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 ATP5J2P56134 94 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 BPIFA4PQ86YQ2 179 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 PRSS3P2Q8NHM4 247 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 C17orf77Q96MU5 243 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 SHANK2-AS3Q9BTD1 123 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 INSIG2Q9Y5U4 225 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 H3BRN7 92 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 NCR2O95944 276 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 SIGLEC15Q6ZMC9 328 aa13.31□□□□□ -0.28
FOXA1-201ENST00000250448 K7EQM0 130 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 LMO4P61968 165 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 PSG9Q00887 426 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 CST9LQ9H4G1 147 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 BUB1B-PAK6H3BSN5 160 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 PSG3Q16557 428 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 Q6AWC8 147 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 PRB4P10163 310 aaPredicted RBP13.3□□□□□ -0.28
FOXA1-201ENST00000250448 CRYBA4P53673 196 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 TPPP3Q9BW30 176 aa13.3□□□□□ -0.28
FOXA1-201ENST00000250448 HILPDAQ9Y5L2 63 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms