RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GLMPQ8WWB7 406 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 RAX2Q96IS3 184 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 RHPN1-AS1Q9BWJ2 59 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 RPH3ALQ9UNE2 315 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 PGPEP1LA6NFU8 196 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 ZNF785A8K8V0 405 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 F6UZH7 168 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 HLA-DMBP28068 263 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 KLF5Q13887 457 aaPredicted RBP15.29■□□□□ 0.04
CLN3-250ENST00000636839 SMIM7Q9BQ49 75 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 TXNDC17Q9BRA2 123 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 AURKAIP1Q9NWT8 199 aaPredicted RBP15.29■□□□□ 0.04
CLN3-250ENST00000636839 TRBV20OR9-2A0A075B6H5 130 aa15.28■□□□□ 0.04
CLN3-250ENST00000636839 LINC01619G3V211 115 aa15.28■□□□□ 0.04
CLN3-250ENST00000636839 C1orf194Q5T5A4 169 aa15.28■□□□□ 0.04
CLN3-250ENST00000636839 SGK494Q96LW2 274 aa15.28■□□□□ 0.04
CLN3-250ENST00000636839 SMPXQ9UHP9 88 aa15.28■□□□□ 0.04
CLN3-250ENST00000636839 M0R3E3 92 aa15.27■□□□□ 0.04
CLN3-250ENST00000636839 CHEK1O14757 476 aa15.27■□□□□ 0.04
CLN3-250ENST00000636839 SLC25A5P05141 298 aaKnown RBP15.27■□□□□ 0.04
CLN3-250ENST00000636839 ATF4P18848 351 aaPredicted RBP15.27■□□□□ 0.04
CLN3-250ENST00000636839 AKR1C3P42330 323 aa15.27■□□□□ 0.04
CLN3-250ENST00000636839 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.27■□□□□ 0.04
CLN3-250ENST00000636839 DPF1Q92782 380 aa15.27■□□□□ 0.04
CLN3-250ENST00000636839 IGKV3-7A0A075B6H7 116 aa15.27■□□□□ 0.03
CLN3-250ENST00000636839 TRAV34A0A0B4J273 112 aa15.27■□□□□ 0.03
CLN3-250ENST00000636839 SVBPQ8N300 66 aa15.27■□□□□ 0.03
CLN3-250ENST00000636839 DLX4Q92988 240 aaPredicted RBP15.27■□□□□ 0.03
CLN3-250ENST00000636839 C11orf52Q96A22 123 aa15.27■□□□□ 0.03
CLN3-250ENST00000636839 K7EMT4 169 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 RPL35P42766 123 aaKnown RBP15.26■□□□□ 0.03
CLN3-250ENST00000636839 C2CD4CQ8TF44 421 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 OTORQ9NRC9 128 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 EPDR1Q9UM22 224 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 UFC1Q9Y3C8 167 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 TSSC4Q9Y5U2 329 aaPredicted RBP15.26■□□□□ 0.03
CLN3-250ENST00000636839 ADARB2-AS1A8MUL3 147 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 S100A7P31151 101 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 GALR1P47211 349 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 ADAMTSL5Q6ZMM2 481 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 CLRN3Q8NCR9 226 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 NIPSNAP3BQ9BS92 247 aa15.26■□□□□ 0.03
CLN3-250ENST00000636839 M0R036 132 aa15.25■□□□□ 0.03
CLN3-250ENST00000636839 REC114Q7Z4M0 266 aa15.25■□□□□ 0.03
CLN3-250ENST00000636839 C1QL4Q86Z23 238 aa15.25■□□□□ 0.03
CLN3-250ENST00000636839 RNF182Q8N6D2 247 aa15.25■□□□□ 0.03
CLN3-250ENST00000636839 NKX6-2Q9C056 277 aaPredicted RBP15.25■□□□□ 0.03
CLN3-250ENST00000636839 TENM1Q9UKZ4 2725 aa15.25■□□□□ 0.03
CLN3-250ENST00000636839 LGALS9O00182 355 aa15.24■□□□□ 0.03
CLN3-250ENST00000636839 PEX7O00628 323 aa15.24■□□□□ 0.03
CLN3-250ENST00000636839 RPL11P62913 178 aaKnown RBP15.24■□□□□ 0.03
CLN3-250ENST00000636839 NSUN5P1Q3KNT7 163 aa15.24■□□□□ 0.03
CLN3-250ENST00000636839 AWAT1Q58HT5 328 aa15.24■□□□□ 0.03
CLN3-250ENST00000636839 RNF24Q9Y225 148 aa15.24■□□□□ 0.03
CLN3-250ENST00000636839 WNK1Q9H4A3 2382 aa15.24■□□□□ 0.03
CLN3-250ENST00000636839 ZNF705FA8MVS1 300 aaPredicted RBP15.24■□□□□ 0.03
CLN3-250ENST00000636839 SDF2L1Q9HCN8 221 aa15.24■□□□□ 0.03
CLN3-250ENST00000636839 HELTA6NFD8 242 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 C2orf70A6NJV1 201 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 A8MWP6 167 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 CCL24O00175 119 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 NDUFS6O75380 124 aaKnown RBP15.23■□□□□ 0.03
CLN3-250ENST00000636839 CBLN1P23435 193 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 TMEM241Q24JQ0 296 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 C5orf17Q8NAS9 161 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 GPR82Q96P67 336 aa15.23■□□□□ 0.03
CLN3-250ENST00000636839 ZNF331Q9NQX6 463 aaPredicted RBP15.23■□□□□ 0.03
CLN3-250ENST00000636839 A0A087X0K7 114 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 TRAV8-2A0A0B4J237 113 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 A0A1W2PS18 150 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 ISLRO14498 428 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 TCRAP04437 139 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 PDE6HQ13956 83 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 ASCL2Q99929 193 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 TRAV8-1A0A0A6YYK1 113 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 FOLR2P14207 255 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 WFDC12Q8WWY7 111 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 TVP23CQ96ET8 276 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 GRAMD2BQ96HH9 432 aa15.22■□□□□ 0.03
CLN3-250ENST00000636839 SNAPINO95295 136 aa15.21■□□□□ 0.03
CLN3-250ENST00000636839 GOLT1AQ6ZVE7 132 aa15.21■□□□□ 0.03
CLN3-250ENST00000636839 GBGT1Q8N5D6 347 aa15.21■□□□□ 0.03
CLN3-250ENST00000636839 NAT8Q9UHE5 227 aa15.21■□□□□ 0.03
CLN3-250ENST00000636839 C7orf77A4D0Y5 90 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 RPL23P62829 140 aaKnown RBP15.21■□□□□ 0.02
CLN3-250ENST00000636839 FHL3Q13643 280 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 ADIRFQ15847 76 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 TCF24Q7RTU0 167 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 LYPD1Q8N2G4 141 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 NHLRC2Q8NBF2 726 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 OCC1Q8TAD7 63 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 CMTM2Q8TAZ6 248 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 MLXQ9UH92 298 aa15.21■□□□□ 0.02
CLN3-250ENST00000636839 PSG9Q00887 426 aa15.2■□□□□ 0.02
CLN3-250ENST00000636839 FAM74A3Q4VXF1 159 aa15.2■□□□□ 0.02
CLN3-250ENST00000636839 CENPWQ5EE01 88 aa15.2■□□□□ 0.02
CLN3-250ENST00000636839 OR9G4Q8NGQ1 327 aa15.2■□□□□ 0.02
CLN3-250ENST00000636839 HIST1H2BAQ96A08 127 aa15.2■□□□□ 0.02
CLN3-250ENST00000636839 AAMDCQ9H7C9 122 aa15.2■□□□□ 0.02
CLN3-250ENST00000636839 PRAC2D3DTV9 90 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms