RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TFF1P04155 84 aa8.2□□□□□ -1.1
VPS39-214ENST00000614932 KIR2DS2P43631 304 aa8.2□□□□□ -1.1
VPS39-214ENST00000614932 RBPMS2Q6ZRY4 209 aaKnown RBP8.2□□□□□ -1.1
VPS39-214ENST00000614932 C3orf56Q8N813 242 aa8.2□□□□□ -1.1
VPS39-214ENST00000614932 OR13C6PQ8NH95 151 aa8.2□□□□□ -1.1
VPS39-214ENST00000614932 FAM234AQ9H0X4 552 aa8.2□□□□□ -1.1
VPS39-214ENST00000614932 PIEZO2Q9H5I5 2752 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 NPIPB11E5RHQ5 1161 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 J3KT08 172 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 NDUFS7O75251 213 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 TNFRSF1AP19438 455 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 ZNF816Q0VGE8 651 aaPredicted RBP8.19□□□□□ -1.1
VPS39-214ENST00000614932 C20orf204Q6ZNR8 217 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 DRAM1Q8N682 238 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 PGLYRP4Q96LB8 373 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 OBP2BQ9NPH6 170 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 TANC2Q9HCD6 1990 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 ZNF292O60281 2723 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 IGKV2D-26A0A0A0MRZ7 120 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 ACTL6BO94805 426 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 DUX5Q96PT3 197 aa8.19□□□□□ -1.1
VPS39-214ENST00000614932 ICE1Q9Y2F5 2266 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 A0A096LNJ9 63 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 TRBV6-6A0A0A6YYG2 114 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 C9JAW5 83 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 F5H768 121 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 H2BFWTQ7Z2G1 175 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 PRR7Q8TB68 274 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 TTTY13Q9BZ97 58 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 HIGD1AQ9Y241 93 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 F8WDY8 70 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 PSMB2P49721 201 aa8.18□□□□□ -1.1
VPS39-214ENST00000614932 DIDO1Q9BTC0 2240 aaKnown RBP8.18□□□□□ -1.1
VPS39-214ENST00000614932 IL4P05112 153 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 GRPP07492 148 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 IGHV1-2P23083 117 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 FGF12P61328 243 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 FOXF2Q12947 444 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 ZNF474Q6S9Z5 364 aaPredicted RBP8.17□□□□□ -1.1
VPS39-214ENST00000614932 MOB3BQ86TA1 216 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 CIARTQ8N365 385 aaPredicted RBP8.17□□□□□ -1.1
VPS39-214ENST00000614932 TMEM158Q8WZ71 300 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 RND1Q92730 232 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 ZNF503Q96F45 646 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 COQ2Q96H96 371 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 C1orf159Q96HA4 380 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 RPP21Q9H633 154 aaKnown RBP8.17□□□□□ -1.1
VPS39-214ENST00000614932 RELNP78509 3460 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 LINC01548A6NM66 108 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 A8MWV9 139 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 PRSS46E5RG02 174 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 IGHG3P01860 377 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 TBC1D28Q2M2D7 210 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 SPRNQ5BIV9 151 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 MORN3Q6PF18 240 aaPredicted RBP8.17□□□□□ -1.1
VPS39-214ENST00000614932 MKXQ8IYA7 352 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 SGK494Q96LW2 274 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 C7orf69Q9H7B7 122 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 C21orf62Q9NYP8 219 aa8.17□□□□□ -1.1
VPS39-214ENST00000614932 TRAV24A0A0B4J272 114 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 C15orf65H3BRN8 121 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 Q6ZQT7 251 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 IFI27L1Q96BM0 104 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 TMEM101Q96IK0 257 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 HEATR1Q9H583 2144 aaKnown RBP8.16□□□□□ -1.1
VPS39-214ENST00000614932 DKK2Q9UBU2 259 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 AMMECR1Q9Y4X0 333 aaPredicted RBP8.16□□□□□ -1.1
VPS39-214ENST00000614932 DYSFO75923 2080 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 ADGRG4Q8IZF6 3080 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 CT83Q5H943 113 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 SBSPONQ8IVN8 264 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 OR1L4Q8NGR5 311 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 PIMREGQ9BSJ6 248 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 CADP27708 2225 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 A0A1B0GX51 115 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 SHISA9B4DS77 424 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 NPFFO15130 113 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 HOXA3O43365 443 aaPredicted RBP8.16□□□□□ -1.1
VPS39-214ENST00000614932 HLA-DRB4P13762 266 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 PRR20EP86478 221 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 PRR20CP86479 221 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 PRR20DP86480 221 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 PRR20BP86481 221 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 PRR20AP86496 221 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 MRPL23Q16540 153 aaKnown RBP8.16□□□□□ -1.1
VPS39-214ENST00000614932 FAM53AQ6NSI3 398 aaPredicted RBP8.16□□□□□ -1.1
VPS39-214ENST00000614932 ZNF826PQ6ZT77 177 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 C9orf106Q8NAJ2 232 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 HIST1H4GQ99525 98 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 HLA-DRB4X5D2U9 266 aa8.16□□□□□ -1.1
VPS39-214ENST00000614932 MUC6Q6W4X9 2439 aa8.15□□□□□ -1.1
VPS39-214ENST00000614932 LOXL1Q08397 574 aaPredicted RBP8.15□□□□□ -1.1
VPS39-214ENST00000614932 KLF17Q5JT82 389 aaPredicted RBP8.15□□□□□ -1.1
VPS39-214ENST00000614932 WDR86Q86TI4 376 aa8.15□□□□□ -1.1
VPS39-214ENST00000614932 ANKRD29Q8N6D5 301 aa8.15□□□□□ -1.1
VPS39-214ENST00000614932 GFRA4Q9GZZ7 299 aa8.15□□□□□ -1.1
VPS39-214ENST00000614932 CACNA1DQ01668 2161 aa8.15□□□□□ -1.1
VPS39-214ENST00000614932 TRAV8-2A0A0B4J237 113 aa8.15□□□□□ -1.11
VPS39-214ENST00000614932 HAX1O00165 279 aa8.15□□□□□ -1.11
VPS39-214ENST00000614932 IFI27P40305 119 aaPredicted RBP8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms