RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 FAM74A7A6NL05 159 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 H3BQ15 152 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 ZNF253O75346 499 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 PSG9Q00887 426 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 MEF2BQ02080 365 aaPredicted RBP11.73□□□□□ -0.53
UPF1-206ENST00000598471 SAMD13Q5VXD3 122 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 SHISA2Q6UWI4 295 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 TCF24Q7RTU0 167 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 LYPD1Q8N2G4 141 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 EIF4E3Q8N5X7 224 aaKnown RBP11.73□□□□□ -0.53
UPF1-206ENST00000598471 RXFP4Q8TDU9 374 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 TREM1Q9NP99 234 aa11.73□□□□□ -0.53
UPF1-206ENST00000598471 C11orf94C9JXX5 98 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 CSN3P07498 182 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 RPL11P62913 178 aaKnown RBP11.72□□□□□ -0.53
UPF1-206ENST00000598471 ICAM4Q14773 271 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 SLC7A5P1Q8MH63 180 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 SPATA3Q8NHX4 192 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 SLC50A1Q9BRV3 221 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 AAMDCQ9H7C9 122 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 SIGLEC8Q9NYZ4 499 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 YTHDF2Q9Y5A9 579 aaKnown RBP11.72□□□□□ -0.53
UPF1-206ENST00000598471 SMAD5-AS1Q9Y6J3 95 aa11.72□□□□□ -0.53
UPF1-206ENST00000598471 H3BTX0 84 aa11.71□□□□□ -0.53
UPF1-206ENST00000598471 PDE6DO43924 150 aa11.71□□□□□ -0.53
UPF1-206ENST00000598471 NDUFS6O75380 124 aaKnown RBP11.71□□□□□ -0.53
UPF1-206ENST00000598471 SNRPCP09234 159 aaKnown RBP11.71□□□□□ -0.53
UPF1-206ENST00000598471 EDN2P20800 178 aa11.71□□□□□ -0.53
UPF1-206ENST00000598471 RANP62826 216 aaKnown RBP11.71□□□□□ -0.53
UPF1-206ENST00000598471 RARRES2Q99969 163 aa11.71□□□□□ -0.53
UPF1-206ENST00000598471 TCEAL7Q9BRU2 100 aa11.71□□□□□ -0.53
UPF1-206ENST00000598471 NRN1Q9NPD7 142 aa11.71□□□□□ -0.53
UPF1-206ENST00000598471 OTORQ9NRC9 128 aa11.71□□□□□ -0.53
UPF1-206ENST00000598471 F6UZH7 168 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 ATP5G3P48201 142 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 PAFAH1B2P68402 229 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 LINC00482Q8N8I6 264 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 CITED4Q96RK1 184 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 Q9H3A6 140 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 CLEC5AQ9NY25 188 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 MLXQ9UH92 298 aa11.7□□□□□ -0.54
UPF1-206ENST00000598471 COL6A5A8TX70 2615 aa11.69□□□□□ -0.54
UPF1-206ENST00000598471 PGPA6NDG6 321 aa11.69□□□□□ -0.54
UPF1-206ENST00000598471 GGTLC3B5MD39 225 aa11.69□□□□□ -0.54
UPF1-206ENST00000598471 NDUFB4O95168 129 aa11.69□□□□□ -0.54
UPF1-206ENST00000598471 SUMO1P63165 101 aaKnown RBP11.69□□□□□ -0.54
UPF1-206ENST00000598471 RBPMS2Q6ZRY4 209 aaKnown RBP11.69□□□□□ -0.54
UPF1-206ENST00000598471 CMTM2Q8TAZ6 248 aa11.69□□□□□ -0.54
UPF1-206ENST00000598471 C17orf77Q96MU5 243 aa11.69□□□□□ -0.54
UPF1-206ENST00000598471 TMEM250H0YL14 139 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 DNASE2O00115 360 aaPredicted RBP11.68□□□□□ -0.54
UPF1-206ENST00000598471 SLC17A3O00476 420 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 SAP30O75446 220 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 SLC25A5P05141 298 aaKnown RBP11.68□□□□□ -0.54
UPF1-206ENST00000598471 CD81P60033 236 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 SRSF3P84103 164 aaKnown RBP11.68□□□□□ -0.54
UPF1-206ENST00000598471 FAM90A2PQ658T7 463 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 ADAMTSL5Q6ZMM2 481 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 C5orf17Q8NAS9 161 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 C16orf92Q96LL3 132 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 SLC35B3Q9H1N7 401 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 ZNF331Q9NQX6 463 aaPredicted RBP11.68□□□□□ -0.54
UPF1-206ENST00000598471 PRELID1Q9Y255 219 aa11.68□□□□□ -0.54
UPF1-206ENST00000598471 IGKV3-7A0A075B6H7 116 aa11.67□□□□□ -0.54
UPF1-206ENST00000598471 TRAV25A0A0B4J276 109 aa11.67□□□□□ -0.54
UPF1-206ENST00000598471 SRP19P09132 144 aaKnown RBP11.67□□□□□ -0.54
UPF1-206ENST00000598471 ID1P41134 155 aa11.67□□□□□ -0.54
UPF1-206ENST00000598471 CSN1S1P47710 185 aa11.67□□□□□ -0.54
UPF1-206ENST00000598471 RPUSD4Q96CM3 377 aaKnown RBP11.67□□□□□ -0.54
UPF1-206ENST00000598471 ISLRO14498 428 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 CEBPGP53567 150 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 DEFB114Q30KQ6 69 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 CCDC28AQ8IWP9 274 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 EXOC3-AS1Q8N2X6 119 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 ARL6IP6Q8N6S5 226 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 OR2K2Q8NGT1 345 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 HIST1H2BAQ96A08 127 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 MS4A6AQ9H2W1 248 aa11.66□□□□□ -0.54
UPF1-206ENST00000598471 TRAV2A0A0B4J234 112 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 SCO2A0A1W2PP80 73 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 TSPAN4O14817 238 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 SFTA3P0C7M3 94 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 GBGT1Q8N5D6 347 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 C11orf52Q96A22 123 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 MRPL53Q96EL3 112 aaKnown RBP11.65□□□□□ -0.54
UPF1-206ENST00000598471 MCRIP2Q9BUT9 160 aaKnown RBP11.65□□□□□ -0.54
UPF1-206ENST00000598471 EPDR1Q9UM22 224 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 RPH3ALQ9UNE2 315 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 SELENOKQ9Y6D0 94 aa11.65□□□□□ -0.54
UPF1-206ENST00000598471 SERTM2A0A1B0GWG4 89 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 TMEM218A2RU14 115 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 C9JQL5 133 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 K7EQM0 130 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 PEX7O00628 323 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 CD33P20138 364 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 AKR1C3P42330 323 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 INSL3P51460 131 aa11.64□□□□□ -0.55
UPF1-206ENST00000598471 SNRPD3P62318 126 aaKnown RBP11.64□□□□□ -0.55
UPF1-206ENST00000598471 CD300EQ496F6 205 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 180.5 ms