RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 MIFP14174 115 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 B2MP61769 119 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 CLINT1Q14677 625 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 OPCMLQ14982 345 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 OXA1LQ15070 435 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 KCNIP2Q9NS61 270 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 MBD2Q9UBB5 411 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 HSPB11Q9Y547 144 aa12.71□□□□□ -0.37
SHKBP1-203ENST00000594298 ZNF705EA8MWA4 302 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 C17orf112F2Z3M2 114 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 RBMY1A1P0DJD3 496 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 RBMY1CP0DJD4 496 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 RBMY1FQ15415 496 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 FOXI2Q6ZQN5 318 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 BPIFA4PQ86YQ2 179 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 OR11H7Q8NGC8 314 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 LRRC20Q8TCA0 184 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 TMEM37Q8WXS4 190 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 ATP5SQ99766 215 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 RPRMQ9NS64 109 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 PXMP4Q9Y6I8 212 aa12.7□□□□□ -0.38
SHKBP1-203ENST00000594298 PCLOQ9Y6V0 5065 aa12.69□□□□□ -0.38
SHKBP1-203ENST00000594298 IGHV4-28A0A0C4DH34 117 aa12.69□□□□□ -0.38
SHKBP1-203ENST00000594298 IFNA5P01569 189 aa12.69□□□□□ -0.38
SHKBP1-203ENST00000594298 EBLN2Q6P2I7 272 aa12.69□□□□□ -0.38
SHKBP1-203ENST00000594298 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.69□□□□□ -0.38
SHKBP1-203ENST00000594298 NPCDR1Q9BY65 106 aa12.69□□□□□ -0.38
SHKBP1-203ENST00000594298 DNAH6Q9C0G6 4158 aa12.69□□□□□ -0.38
SHKBP1-203ENST00000594298 KIAA1109Q2LD37 5005 aa12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 A0A087X0K7 114 aa12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 H3BMM0 161 aa12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 GIPP09681 153 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 HLA-DRB4P13762 266 aa12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 SCGB1C1Q8TD33 95 aa12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 C1QTNF4Q9BXJ3 329 aa12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 WDR61Q9GZS3 305 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 SAV1Q9H4B6 383 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 HLA-DRB4X5D2U9 266 aa12.68□□□□□ -0.38
SHKBP1-203ENST00000594298 CXCL2P19875 107 aa12.67□□□□□ -0.38
SHKBP1-203ENST00000594298 C4BPBP20851 252 aa12.67□□□□□ -0.38
SHKBP1-203ENST00000594298 HLA-DMBP28068 263 aa12.67□□□□□ -0.38
SHKBP1-203ENST00000594298 X6R8D5 127 aa12.67□□□□□ -0.38
SHKBP1-203ENST00000594298 TRAV10A0A0B4J240 114 aa12.66□□□□□ -0.38
SHKBP1-203ENST00000594298 LCN15Q6UWW0 184 aa12.66□□□□□ -0.38
SHKBP1-203ENST00000594298 Q6ZTC4 211 aa12.66□□□□□ -0.38
SHKBP1-203ENST00000594298 CSNK1G2-AS1Q8NCQ2 148 aa12.66□□□□□ -0.38
SHKBP1-203ENST00000594298 C17orf77Q96MU5 243 aa12.66□□□□□ -0.38
SHKBP1-203ENST00000594298 CLUHP3Q96NS8 147 aa12.66□□□□□ -0.38
SHKBP1-203ENST00000594298 MRPS12O15235 138 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-203ENST00000594298 GUK1Q16774 197 aa12.65□□□□□ -0.38
SHKBP1-203ENST00000594298 LINC00336Q6ZUF6 198 aa12.65□□□□□ -0.38
SHKBP1-203ENST00000594298 SLC50A1Q9BRV3 221 aa12.65□□□□□ -0.38
SHKBP1-203ENST00000594298 SMIM3Q9BZL3 60 aa12.65□□□□□ -0.38
SHKBP1-203ENST00000594298 CLEC5AQ9NY25 188 aa12.65□□□□□ -0.38
SHKBP1-203ENST00000594298 IGHV4-4A0A075B6R2 117 aa12.64□□□□□ -0.39
SHKBP1-203ENST00000594298 DUSP14O95147 198 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-203ENST00000594298 OR4B1Q8NGF8 309 aa12.64□□□□□ -0.39
SHKBP1-203ENST00000594298 PARD6GQ9BYG4 376 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-203ENST00000594298 TRAV8-2A0A0B4J237 113 aa12.63□□□□□ -0.39
SHKBP1-203ENST00000594298 A0A0J9YX75 114 aa12.63□□□□□ -0.39
SHKBP1-203ENST00000594298 PSG3Q16557 428 aa12.63□□□□□ -0.39
SHKBP1-203ENST00000594298 FAM78BQ5VT40 261 aa12.63□□□□□ -0.39
SHKBP1-203ENST00000594298 INO80EQ8NBZ0 244 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-203ENST00000594298 ZNF738Q8NE65 137 aa12.63□□□□□ -0.39
SHKBP1-203ENST00000594298 C20orf173Q96LM9 149 aa12.63□□□□□ -0.39
SHKBP1-203ENST00000594298 TRAV5A0A0B4J249 113 aa12.62□□□□□ -0.39
SHKBP1-203ENST00000594298 IGKV3-20P01619 116 aa12.62□□□□□ -0.39
SHKBP1-203ENST00000594298 PSG9Q00887 426 aa12.62□□□□□ -0.39
SHKBP1-203ENST00000594298 GDF5OSQ5U4N7 250 aa12.62□□□□□ -0.39
SHKBP1-203ENST00000594298 AQP10Q96PS8 301 aa12.62□□□□□ -0.39
SHKBP1-203ENST00000594298 MRPL32Q9BYC8 188 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-203ENST00000594298 TMEM14CQ9P0S9 112 aa12.62□□□□□ -0.39
SHKBP1-203ENST00000594298 AMBPP02760 352 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 IGLC2P0DOY2 106 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 DEFB1P60022 68 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 ZNF266Q14584 549 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 MORN5Q5VZ52 161 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 IGFL4Q6B9Z1 124 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 RNF182Q8N6D2 247 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 OR2T35Q8NGX2 323 aa12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 ZNF331Q9NQX6 463 aaPredicted RBP12.61□□□□□ -0.39
SHKBP1-203ENST00000594298 F6UB75 175 aa12.6□□□□□ -0.39
SHKBP1-203ENST00000594298 C12orf74Q32Q52 190 aa12.6□□□□□ -0.39
SHKBP1-203ENST00000594298 FFAR4Q5NUL3 377 aa12.6□□□□□ -0.39
SHKBP1-203ENST00000594298 XCL2Q9UBD3 114 aa12.6□□□□□ -0.39
SHKBP1-203ENST00000594298 CELA1Q9UNI1 258 aa12.6□□□□□ -0.39
SHKBP1-203ENST00000594298 FAT2Q9NYQ8 4349 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 DEFB131BA0A096LNP1 70 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 H3BQ15 152 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 ZNF253O75346 499 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 HIST1H1EP10412 219 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 Q5BKY6 102 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 GCSAMLQ5JQS6 135 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 RPUSD4Q96CM3 377 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 WFDC1Q9HC57 220 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 PPP1R14DQ9NXH3 145 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 FUT9Q9Y231 359 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 TIMM9Q9Y5J7 89 aa12.59□□□□□ -0.39
SHKBP1-203ENST00000594298 FXYD6-FXYD2A0A087WZ82 144 aa12.58□□□□□ -0.4
SHKBP1-203ENST00000594298 A0A1B0GVY2 172 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms