RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SPANXN5Q5MJ07 72 aa14.81□□□□□ -0.04
VPS53-216ENST00000574029 RNF182Q8N6D2 247 aa14.81□□□□□ -0.04
VPS53-216ENST00000574029 ATG101Q9BSB4 218 aa14.81□□□□□ -0.04
VPS53-216ENST00000574029 KRTAP4-5Q9BYR2 181 aa14.81□□□□□ -0.04
VPS53-216ENST00000574029 STRAPQ9Y3F4 350 aaKnown RBP14.81□□□□□ -0.04
VPS53-216ENST00000574029 H3BRN7 92 aa14.8□□□□□ -0.04
VPS53-216ENST00000574029 CCSO14618 274 aa14.8□□□□□ -0.04
VPS53-216ENST00000574029 MBPP02686 304 aaPredicted RBP14.8□□□□□ -0.04
VPS53-216ENST00000574029 ACOT7LQ6ZUV0 252 aa14.8□□□□□ -0.04
VPS53-216ENST00000574029 TMEM144Q7Z5S9 345 aa14.8□□□□□ -0.04
VPS53-216ENST00000574029 BAP18Q8IXM2 172 aa14.8□□□□□ -0.04
VPS53-216ENST00000574029 C2orf50Q96LR7 162 aa14.8□□□□□ -0.04
VPS53-216ENST00000574029 SLC25A39Q9BZJ4 359 aaPredicted RBP14.8□□□□□ -0.04
VPS53-216ENST00000574029 PSENENQ9NZ42 101 aa14.8□□□□□ -0.04
VPS53-216ENST00000574029 C5orf51A6NDU8 294 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 BOLA2-SMG1P6H3BVE0 249 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 SSSCA1O60232 199 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 DEFB130BP0DP73 79 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 DEFB130AP0DP74 79 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 AZU1P20160 251 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 IL15RAQ13261 267 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 ZNRF2Q8NHG8 242 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 SHANK2-AS3Q9BTD1 123 aa14.79□□□□□ -0.04
VPS53-216ENST00000574029 RCL1Q9Y2P8 373 aaKnown RBP14.79□□□□□ -0.04
VPS53-216ENST00000574029 NBDYA0A0U1RRE5 68 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 FAM25EA8MYX2 175 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 H3BP45 60 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 TSC22D2O75157 780 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 SCGB1D2O95969 90 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 TNP2Q05952 138 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 FGL1Q08830 312 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 TMEM14EPQ6UXP3 125 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 CYP2G1PQ6ZSU1 146 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 ZNF738Q8NE65 137 aa14.78□□□□□ -0.04
VPS53-216ENST00000574029 TRAV12-2A0A075B6T6 113 aa14.77□□□□□ -0.05
VPS53-216ENST00000574029 PMS2P5A8MQ11 134 aa14.77□□□□□ -0.05
VPS53-216ENST00000574029 F5H768 121 aa14.77□□□□□ -0.05
VPS53-216ENST00000574029 RPL7P18124 248 aaKnown RBP14.77□□□□□ -0.05
VPS53-216ENST00000574029 PLP1P60201 277 aa14.77□□□□□ -0.05
VPS53-216ENST00000574029 FCN2Q15485 313 aa14.77□□□□□ -0.05
VPS53-216ENST00000574029 HIGD1AQ9Y241 93 aa14.77□□□□□ -0.05
VPS53-216ENST00000574029 C7orf66A4D0T2 115 aa14.76□□□□□ -0.05
VPS53-216ENST00000574029 CBY3A6NI87 242 aa14.76□□□□□ -0.05
VPS53-216ENST00000574029 ATP5G1P05496 136 aa14.76□□□□□ -0.05
VPS53-216ENST00000574029 ATP5G3P48201 142 aa14.76□□□□□ -0.05
VPS53-216ENST00000574029 RAP2BP61225 183 aa14.76□□□□□ -0.05
VPS53-216ENST00000574029 TMEM256Q8N2U0 113 aa14.76□□□□□ -0.05
VPS53-216ENST00000574029 OR8A1Q8NGG7 326 aa14.76□□□□□ -0.05
VPS53-216ENST00000574029 A0A087X0K7 114 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 K7EPK0 472 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 HYPMO75409 117 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 NUDT3O95989 172 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 CXCL3P19876 107 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 TAS2R60P59551 318 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 HIST1H1AQ02539 215 aaPredicted RBP14.75□□□□□ -0.05
VPS53-216ENST00000574029 C6orf223Q8N319 242 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 LINC01587Q99440 93 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 C11orf1Q9H5F2 150 aa14.75□□□□□ -0.05
VPS53-216ENST00000574029 SMCO3A2RU48 225 aa14.74□□□□□ -0.05
VPS53-216ENST00000574029 C16orf90A8MZG2 172 aa14.74□□□□□ -0.05
VPS53-216ENST00000574029 PTTG1O95997 202 aa14.74□□□□□ -0.05
VPS53-216ENST00000574029 PSG3Q16557 428 aa14.74□□□□□ -0.05
VPS53-216ENST00000574029 ABCA13Q86UQ4 5058 aa14.74□□□□□ -0.05
VPS53-216ENST00000574029 FNDC10F2Z333 226 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 CDK2AP2O75956 126 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 LINC00869P0C866 280 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 CCL18P55774 89 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 SELENOTP62341 195 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 RHOBP62745 196 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 C16orf74Q96GX8 76 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 UHRF2Q96PU4 802 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 LINC00588Q9Y4M8 146 aa14.73□□□□□ -0.05
VPS53-216ENST00000574029 LSM5Q9Y4Y9 91 aaKnown RBP14.73□□□□□ -0.05
VPS53-216ENST00000574029 L7N2F9 121 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 OR5G3P0C626 314 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 METTL15P1P0C7V9 234 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 VAMP2P63027 116 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 DLK1P80370 383 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 OR10P1Q8NGE3 313 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 RNF141Q8WVD5 230 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 NMES1Q9C002 83 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 PPP1R14DQ9NXH3 145 aa14.72□□□□□ -0.05
VPS53-216ENST00000574029 HSPG2P98160 4391 aa14.71□□□□□ -0.05
VPS53-216ENST00000574029 MRPS12O15235 138 aaKnown RBP14.71□□□□□ -0.05
VPS53-216ENST00000574029 CYCSP99999 105 aaKnown RBP14.71□□□□□ -0.05
VPS53-216ENST00000574029 RAB32Q13637 225 aa14.71□□□□□ -0.05
VPS53-216ENST00000574029 GGACTQ9BVM4 153 aa14.71□□□□□ -0.05
VPS53-216ENST00000574029 TIMM8BQ9Y5J9 83 aaPredicted RBP14.71□□□□□ -0.05
VPS53-216ENST00000574029 GOSR2O14653 212 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 CCNKO75909 580 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 HTN1P15515 57 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 PVALBP20472 110 aaPredicted RBP14.7□□□□□ -0.06
VPS53-216ENST00000574029 CDKN1BP46527 198 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 PATE2Q6UY27 113 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 ZNF493Q6ZR52 646 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 S100A7AQ86SG5 101 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 LRRC20Q8TCA0 184 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 RNASE8Q8TDE3 154 aaKnown RBP14.7□□□□□ -0.06
VPS53-216ENST00000574029 NPVFQ9HCQ7 196 aa14.7□□□□□ -0.06
VPS53-216ENST00000574029 SIX6O95475 246 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms