RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 NEDD8Q15843 81 aa10.88□□□□□ -0.67
CLK3-223ENST00000568488 GPR107Q5VW38 600 aa10.88□□□□□ -0.67
CLK3-223ENST00000568488 WFDC10BQ8IUB3 73 aa10.88□□□□□ -0.67
CLK3-223ENST00000568488 IL22RA2Q969J5 263 aa10.88□□□□□ -0.67
CLK3-223ENST00000568488 RTBDNQ9BSG5 229 aaPredicted RBP10.88□□□□□ -0.67
CLK3-223ENST00000568488 PRR13Q9NZ81 148 aa10.88□□□□□ -0.67
CLK3-223ENST00000568488 FUT9Q9Y231 359 aa10.88□□□□□ -0.67
CLK3-223ENST00000568488 TRAV12-3A0A0B4J271 114 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 IGHV3-53P01767 116 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 APOA1P02647 267 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 RPL7P18124 248 aaKnown RBP10.87□□□□□ -0.67
CLK3-223ENST00000568488 CCR6P51684 374 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 STEAP1BQ6NZ63 245 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 Q8N814 137 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 OR1S1Q8NH92 325 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 VCX3BQ9H321 246 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 GSN-AS1Q9NRJ2 163 aa10.87□□□□□ -0.67
CLK3-223ENST00000568488 LRCOL1A6NCL2 159 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 ANKRD65E5RJM6 399 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 H3BRN7 92 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 K7EP13 123 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 PRAF2O60831 178 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 CRYGDP07320 174 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 RAP2BP61225 183 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 SMCO1Q147U7 214 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 MRPL23Q16540 153 aaKnown RBP10.86□□□□□ -0.67
CLK3-223ENST00000568488 NEGR1Q7Z3B1 354 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 OR52I2Q8NH67 350 aa10.86□□□□□ -0.67
CLK3-223ENST00000568488 CRYM-AS1A6NIL9 109 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 RAB3DO95716 219 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 C1QBP02746 253 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 IAPPP10997 89 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 TBPP20226 339 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 SHANK2-AS3Q9BTD1 123 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 RAB26Q9ULW5 256 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 HIGD1AQ9Y241 93 aa10.85□□□□□ -0.67
CLK3-223ENST00000568488 HPGDSO60760 199 aa10.84□□□□□ -0.67
CLK3-223ENST00000568488 SNRPCP09234 159 aaKnown RBP10.84□□□□□ -0.67
CLK3-223ENST00000568488 LYZL2Q7Z4W2 148 aa10.84□□□□□ -0.67
CLK3-223ENST00000568488 C8orf49Q96NF6 230 aa10.84□□□□□ -0.67
CLK3-223ENST00000568488 PYGO2Q9BRQ0 406 aa10.84□□□□□ -0.67
CLK3-223ENST00000568488 PRO0255Q9UI72 69 aa10.84□□□□□ -0.67
CLK3-223ENST00000568488 HHLA3Q9XRX5 114 aa10.84□□□□□ -0.67
CLK3-223ENST00000568488 A0A087X0K7 114 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 FAM25AB3EWG3 89 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 FAM25CB3EWG5 89 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 FAM25GB3EWG6 89 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 OR5G3P0C626 314 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 ANXA7P20073 488 aaKnown RBP10.83□□□□□ -0.68
CLK3-223ENST00000568488 CRYBA4P53673 196 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 AKR1C1Q04828 323 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 FAAP20Q6NZ36 180 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 TMEM229BQ8NBD8 167 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 MTFP1Q9UDX5 166 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 KCNIP3Q9Y2W7 256 aa10.83□□□□□ -0.68
CLK3-223ENST00000568488 PRAC2D3DTV9 90 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 E5RGE8 158 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 HYPMO75409 117 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 IL5P05113 134 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 AKR1C4P17516 323 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 TAS2R19P59542 299 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 SLAQ13239 276 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 C10orf126Q8N4M7 172 aa10.82□□□□□ -0.68
CLK3-223ENST00000568488 PMS2P5A8MQ11 134 aa10.81□□□□□ -0.68
CLK3-223ENST00000568488 LEPP41159 167 aa10.81□□□□□ -0.68
CLK3-223ENST00000568488 ZNF415Q09FC8 603 aa10.81□□□□□ -0.68
CLK3-223ENST00000568488 ZNF680Q8NEM1 530 aa10.81□□□□□ -0.68
CLK3-223ENST00000568488 ZNF431Q8TF32 576 aaPredicted RBP10.81□□□□□ -0.68
CLK3-223ENST00000568488 ST6GAL2Q96JF0 529 aa10.81□□□□□ -0.68
CLK3-223ENST00000568488 GPR132Q9UNW8 380 aa10.81□□□□□ -0.68
CLK3-223ENST00000568488 RCL1Q9Y2P8 373 aaKnown RBP10.81□□□□□ -0.68
CLK3-223ENST00000568488 KLF12Q9Y4X4 402 aa10.81□□□□□ -0.68
CLK3-223ENST00000568488 PKHD1L1Q86WI1 4243 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 A0A0B4J2A0 478 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 CT45A10P0DMU9 189 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 SRIP30626 198 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 CYP2G1PQ6ZSU1 146 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 C11orf72Q8NBR9 251 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 Q9HAA7 133 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 SHPKQ9UHJ6 478 aa10.8□□□□□ -0.68
CLK3-223ENST00000568488 SMCO3A2RU48 225 aa10.79□□□□□ -0.68
CLK3-223ENST00000568488 DISC1C4P0D8 188 aa10.79□□□□□ -0.68
CLK3-223ENST00000568488 SPINK4O60575 86 aa10.79□□□□□ -0.68
CLK3-223ENST00000568488 FHL2Q14192 279 aa10.79□□□□□ -0.68
CLK3-223ENST00000568488 SURF2Q15527 256 aaPredicted RBP10.79□□□□□ -0.68
CLK3-223ENST00000568488 Q6ZSA8 131 aa10.79□□□□□ -0.68
CLK3-223ENST00000568488 ZBTB8BQ8NAP8 495 aaPredicted RBP10.79□□□□□ -0.68
CLK3-223ENST00000568488 ZNF331Q9NQX6 463 aaPredicted RBP10.79□□□□□ -0.68
CLK3-223ENST00000568488 LINC00854A0A1B0GVQ3 168 aa10.78□□□□□ -0.68
CLK3-223ENST00000568488 H3BTX0 84 aa10.78□□□□□ -0.68
CLK3-223ENST00000568488 K7EQD1 137 aa10.78□□□□□ -0.68
CLK3-223ENST00000568488 LINC00869P0C866 280 aa10.78□□□□□ -0.68
CLK3-223ENST00000568488 RPP30P78346 268 aaKnown RBP10.78□□□□□ -0.68
CLK3-223ENST00000568488 LCN15Q6UWW0 184 aa10.78□□□□□ -0.68
CLK3-223ENST00000568488 PCNPQ8WW12 178 aaKnown RBP10.78□□□□□ -0.68
CLK3-223ENST00000568488 SLC50A1Q9BRV3 221 aa10.78□□□□□ -0.68
CLK3-223ENST00000568488 MRPL16Q9NX20 251 aaKnown RBP10.78□□□□□ -0.68
CLK3-223ENST00000568488 TRAV5A0A0B4J249 113 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 TRGV4A0A0C4DH28 118 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 PRSS46E5RG02 174 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms