RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SNRPCP09234 159 aaKnown RBP11.78□□□□□ -0.52
CLN3-211ENST00000564091 PLP1P60201 277 aa11.78□□□□□ -0.52
CLN3-211ENST00000564091 NOP10Q9NPE3 64 aaKnown RBP11.78□□□□□ -0.52
CLN3-211ENST00000564091 NACAE9PAV3 2078 aa11.77□□□□□ -0.52
CLN3-211ENST00000564091 A0A087X0K7 114 aa11.77□□□□□ -0.53
CLN3-211ENST00000564091 SSSCA1O60232 199 aa11.77□□□□□ -0.53
CLN3-211ENST00000564091 PATE2Q6UY27 113 aa11.77□□□□□ -0.53
CLN3-211ENST00000564091 TMEM256Q8N2U0 113 aa11.77□□□□□ -0.53
CLN3-211ENST00000564091 RPUSD4Q96CM3 377 aaKnown RBP11.77□□□□□ -0.53
CLN3-211ENST00000564091 ARL6Q9H0F7 186 aa11.77□□□□□ -0.53
CLN3-211ENST00000564091 TIMM8BQ9Y5J9 83 aaPredicted RBP11.77□□□□□ -0.53
CLN3-211ENST00000564091 C9orf170A2RU37 121 aa11.76□□□□□ -0.53
CLN3-211ENST00000564091 ANXA7P20073 488 aaKnown RBP11.76□□□□□ -0.53
CLN3-211ENST00000564091 SELENOTP62341 195 aa11.76□□□□□ -0.53
CLN3-211ENST00000564091 CLINT1Q14677 625 aa11.76□□□□□ -0.53
CLN3-211ENST00000564091 KIR3DS1Q14943 382 aa11.76□□□□□ -0.53
CLN3-211ENST00000564091 SSX7Q7RTT5 188 aa11.76□□□□□ -0.53
CLN3-211ENST00000564091 C16orf74Q96GX8 76 aa11.76□□□□□ -0.53
CLN3-211ENST00000564091 MRPS12O15235 138 aaKnown RBP11.75□□□□□ -0.53
CLN3-211ENST00000564091 CDK2AP2O75956 126 aa11.75□□□□□ -0.53
CLN3-211ENST00000564091 METTL15P1P0C7V9 234 aa11.75□□□□□ -0.53
CLN3-211ENST00000564091 CDKN1BP46527 198 aa11.75□□□□□ -0.53
CLN3-211ENST00000564091 SLC38A11Q08AI6 406 aa11.75□□□□□ -0.53
CLN3-211ENST00000564091 OR5I1Q13606 314 aa11.75□□□□□ -0.53
CLN3-211ENST00000564091 MAPKAPK5-AS1Q8N8E1 139 aa11.75□□□□□ -0.53
CLN3-211ENST00000564091 RNASE8Q8TDE3 154 aaKnown RBP11.75□□□□□ -0.53
CLN3-211ENST00000564091 PARD6GQ9BYG4 376 aaPredicted RBP11.75□□□□□ -0.53
CLN3-211ENST00000564091 ARV1Q9H2C2 271 aa11.75□□□□□ -0.53
CLN3-211ENST00000564091 DLK1P80370 383 aa11.74□□□□□ -0.53
CLN3-211ENST00000564091 TMEM14EPQ6UXP3 125 aa11.74□□□□□ -0.53
CLN3-211ENST00000564091 DEDD2Q8WXF8 326 aa11.74□□□□□ -0.53
CLN3-211ENST00000564091 SMIM8Q96KF7 97 aa11.74□□□□□ -0.53
CLN3-211ENST00000564091 Q9H8V8 135 aa11.74□□□□□ -0.53
CLN3-211ENST00000564091 NPVFQ9HCQ7 196 aa11.74□□□□□ -0.53
CLN3-211ENST00000564091 FLVCR2Q9UPI3 526 aa11.74□□□□□ -0.53
CLN3-211ENST00000564091 TRAV26-1A0A087WT03 109 aa11.73□□□□□ -0.53
CLN3-211ENST00000564091 PRAC2D3DTV9 90 aa11.73□□□□□ -0.53
CLN3-211ENST00000564091 H3BTX0 84 aa11.73□□□□□ -0.53
CLN3-211ENST00000564091 UBE2MP61081 183 aaKnown RBP11.73□□□□□ -0.53
CLN3-211ENST00000564091 ZNF493Q6ZR52 646 aa11.73□□□□□ -0.53
CLN3-211ENST00000564091 TMEM263Q8WUH6 116 aaKnown RBP11.73□□□□□ -0.53
CLN3-211ENST00000564091 A0A0J9YY99 117 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 H7BYZ3 331 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 SCGB1D2O95969 90 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 S100A5P33763 92 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 TEPPQ6URK8 271 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 LINC00305Q7Z4B0 112 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 SPATA12Q7Z6I5 190 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 S100A7AQ86SG5 101 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 CCDC190Q86UF4 302 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 OR10P1Q8NGE3 313 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 GNPNAT1Q96EK6 184 aaPredicted RBP11.72□□□□□ -0.53
CLN3-211ENST00000564091 KRTAP1-5Q9BYS1 174 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 ZNF331Q9NQX6 463 aaPredicted RBP11.72□□□□□ -0.53
CLN3-211ENST00000564091 MGAT4CQ9UBM8 478 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 HERC1Q15751 4861 aa11.72□□□□□ -0.53
CLN3-211ENST00000564091 K7EPK0 472 aa11.71□□□□□ -0.53
CLN3-211ENST00000564091 ARL16Q0P5N6 197 aa11.71□□□□□ -0.53
CLN3-211ENST00000564091 GFI1BQ5VTD9 330 aa11.71□□□□□ -0.53
CLN3-211ENST00000564091 GAGE12BA1L429 117 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 FNDC10F2Z333 226 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 J3KRW8 73 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 SLC17A3O00476 420 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 GOSR2O14653 212 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 AGPAT2O15120 278 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 GAGE7O76087 117 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 NDUFB6O95139 128 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 OR4E1P0C645 316 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 GAGE12FP0CL80 117 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 GAGE12GP0CL81 117 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 GAGE12IP0CL82 117 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 CXCL2P19875 107 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 M6PRP20645 277 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 HOXA5P20719 270 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 IAH1Q2TAA2 248 aaPredicted RBP11.7□□□□□ -0.54
CLN3-211ENST00000564091 MORN5Q5VZ52 161 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 LCN15Q6UWW0 184 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 CCDC28AQ8IWP9 274 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 LINC00612Q8N6U2 182 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 OR10J6PQ8NGY7 276 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 SLC50A1Q9BRV3 221 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 GSKIPQ9P0R6 139 aa11.7□□□□□ -0.54
CLN3-211ENST00000564091 LINC00854A0A1B0GVQ3 168 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 ZNF701M0R085 212 aaPredicted RBP11.69□□□□□ -0.54
CLN3-211ENST00000564091 BAK1Q16611 211 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 ESRGQ1W209 222 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 ZNF546Q86UE3 836 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 ZBTB8BQ8NAP8 495 aaPredicted RBP11.69□□□□□ -0.54
CLN3-211ENST00000564091 RXFP4Q8TDU9 374 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 TMEM37Q8WXS4 190 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 SRRQ9GZT4 340 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 RNF24Q9Y225 148 aa11.69□□□□□ -0.54
CLN3-211ENST00000564091 FAT1Q14517 4588 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 CCDC160A6NGH7 325 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 COX7A2P2O60397 106 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 TSC22D2O75157 780 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 OPCMLQ14982 345 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 C4orf46Q504U0 113 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 PXDC1Q5TGL8 231 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 BPIFA4PQ86YQ2 179 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms