RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 OR1L4Q8NGR5 311 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 LYPD6BQ8NI32 183 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 FAM110AQ9BQ89 295 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 NBEAL2Q6ZNJ1 2754 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 LOC102724200A0A096LPH7 203 aaPredicted RBP10.62□□□□□ -0.71
USP3-221ENST00000561442 TRAV5A0A0B4J249 113 aa10.62□□□□□ -0.71
USP3-221ENST00000561442 UMAD1C9J7I0 102 aa10.62□□□□□ -0.71
USP3-221ENST00000561442 SNRPCP09234 159 aaKnown RBP10.62□□□□□ -0.71
USP3-221ENST00000561442 RPL7P18124 248 aaKnown RBP10.62□□□□□ -0.71
USP3-221ENST00000561442 ATF4P18848 351 aaPredicted RBP10.62□□□□□ -0.71
USP3-221ENST00000561442 GNPNAT1Q96EK6 184 aaPredicted RBP10.62□□□□□ -0.71
USP3-221ENST00000561442 C17orf77Q96MU5 243 aa10.62□□□□□ -0.71
USP3-221ENST00000561442 PFDN5Q99471 154 aa10.62□□□□□ -0.71
USP3-221ENST00000561442 RFNGQ9Y644 331 aa10.62□□□□□ -0.71
USP3-221ENST00000561442 KNCNA6PVL3 124 aa10.61□□□□□ -0.71
USP3-221ENST00000561442 C17orf112F2Z3M2 114 aa10.61□□□□□ -0.71
USP3-221ENST00000561442 SNRPD3P62318 126 aaKnown RBP10.61□□□□□ -0.71
USP3-221ENST00000561442 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.61□□□□□ -0.71
USP3-221ENST00000561442 LINC00322Q6ZN03 302 aaPredicted RBP10.61□□□□□ -0.71
USP3-221ENST00000561442 GPR82Q96P67 336 aa10.61□□□□□ -0.71
USP3-221ENST00000561442 SMDT1Q9H4I9 107 aa10.61□□□□□ -0.71
USP3-221ENST00000561442 KCNIP2Q9NS61 270 aa10.61□□□□□ -0.71
USP3-221ENST00000561442 TMEM218A2RU14 115 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 SOCS3O14543 225 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 FFAR4Q5NUL3 377 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 C10orf91Q5T1B1 145 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 SPATA31B1PQ5VZV4 182 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 IGFL4Q6B9Z1 124 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 DPPA3Q6W0C5 159 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 SVBPQ8N300 66 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 C16orf92Q96LL3 132 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 RETNQ9HD89 108 aa10.6□□□□□ -0.71
USP3-221ENST00000561442 CARHSP1Q9Y2V2 147 aaKnown RBP10.6□□□□□ -0.71
USP3-221ENST00000561442 H3BTX0 84 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 NHLRC4P0CG21 123 aaPredicted RBP10.59□□□□□ -0.71
USP3-221ENST00000561442 ID1P41134 155 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 PSMB3P49720 205 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 MEOX2P50222 304 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 DEFB1P60022 68 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 ACTL10Q5JWF8 245 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 FAM78BQ5VT40 261 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 BPIFA4PQ86YQ2 179 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 HSD17B11Q8NBQ5 300 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 GATAD1Q8WUU5 269 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 C20orf173Q96LM9 149 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 SEC11CQ9BY50 192 aa10.59□□□□□ -0.71
USP3-221ENST00000561442 PARD6GQ9BYG4 376 aaPredicted RBP10.59□□□□□ -0.71
USP3-221ENST00000561442 MRPS12O15235 138 aaKnown RBP10.58□□□□□ -0.72
USP3-221ENST00000561442 MIR17HGQ75NE6 70 aa10.58□□□□□ -0.72
USP3-221ENST00000561442 STHQ8IWL8 128 aa10.58□□□□□ -0.72
USP3-221ENST00000561442 TM2D3Q9BRN9 247 aa10.58□□□□□ -0.72
USP3-221ENST00000561442 ZMAT4Q9H898 229 aa10.58□□□□□ -0.72
USP3-221ENST00000561442 SEPSECSQ9HD40 501 aaKnown RBP10.58□□□□□ -0.72
USP3-221ENST00000561442 RNF24Q9Y225 148 aa10.58□□□□□ -0.72
USP3-221ENST00000561442 A0A087X0K7 114 aa10.57□□□□□ -0.72
USP3-221ENST00000561442 TRAV8-2A0A0B4J237 113 aa10.57□□□□□ -0.72
USP3-221ENST00000561442 ISLRO14498 428 aa10.57□□□□□ -0.72
USP3-221ENST00000561442 EIF3GO75821 320 aaKnown RBP eCLIP10.57□□□□□ -0.72
USP3-221ENST00000561442 APOC4P55056 127 aa10.57□□□□□ -0.72
USP3-221ENST00000561442 RNF182Q8N6D2 247 aa10.57□□□□□ -0.72
USP3-221ENST00000561442 TENM3Q9P273 2699 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 H3BQ15 152 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 SNAPINO95295 136 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 APOC3P02656 99 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 PRB4P10163 310 aaPredicted RBP10.56□□□□□ -0.72
USP3-221ENST00000561442 ATP6V0CP27449 155 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 HLA-DMBP28068 263 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 PEA15Q15121 130 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 SAMD13Q5VXD3 122 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 RCHY1Q96PM5 261 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 SPATA25Q9BR10 227 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 U3KQK5 164 aa10.56□□□□□ -0.72
USP3-221ENST00000561442 F6UB75 175 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 SLC17A3O00476 420 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 IGLC2P0DOY2 106 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 PYYP10082 97 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 RAB2AP61019 212 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 GDF5OSQ5U4N7 250 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 TRPT1Q86TN4 253 aaKnown RBP10.55□□□□□ -0.72
USP3-221ENST00000561442 SLC25A2Q9BXI2 301 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 SH3BGRL3Q9H299 93 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 HRH4Q9H3N8 390 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 TREM1Q9NP99 234 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 FUT9Q9Y231 359 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 TIMM9Q9Y5J7 89 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 STAB2Q8WWQ8 2551 aa10.55□□□□□ -0.72
USP3-221ENST00000561442 KIR2DL5BA0A0G2JN68 375 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 KIR2DL5BA0A0G2JPC4 375 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 F8W036 122 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 CA1P00915 261 aaPredicted RBP10.54□□□□□ -0.72
USP3-221ENST00000561442 IGKV3-20P01619 116 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 HBE1P02100 147 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 DEFB135Q30KP9 77 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 ACOT6Q3I5F7 207 aaPredicted RBP10.54□□□□□ -0.72
USP3-221ENST00000561442 LCN15Q6UWW0 184 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 KIR2DL5AQ8N109 375 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 KIR2DL5BQ8NHK3 375 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 FAM167A-AS1Q96KT0 104 aa10.54□□□□□ -0.72
USP3-221ENST00000561442 PSMG3Q9BT73 122 aaPredicted RBP10.54□□□□□ -0.72
USP3-221ENST00000561442 MRPL32Q9BYC8 188 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms