RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PAXXQ9BUH6 204 aa7.51□□□□□ -1.21
USP3-216ENST00000559873 SLC25A2Q9BXI2 301 aa7.51□□□□□ -1.21
USP3-216ENST00000559873 ACTR3CQ9C0K3 210 aaPredicted RBP7.51□□□□□ -1.21
USP3-216ENST00000559873 OR51M1Q9H341 326 aa7.51□□□□□ -1.21
USP3-216ENST00000559873 RPRMQ9NS64 109 aa7.51□□□□□ -1.21
USP3-216ENST00000559873 MEGF8Q7Z7M0 2845 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 SOCS3O14543 225 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 MRPS12O15235 138 aaKnown RBP7.5□□□□□ -1.21
USP3-216ENST00000559873 PSG9Q00887 426 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 CD300CQ08708 224 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 LGALSLQ3ZCW2 172 aaPredicted RBP7.5□□□□□ -1.21
USP3-216ENST00000559873 MORN5Q5VZ52 161 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 SPATA31B1PQ5VZV4 182 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 LINC00052Q96N35 136 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 WFDC10AQ9H1F0 79 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 AAMDCQ9H7C9 122 aa7.5□□□□□ -1.21
USP3-216ENST00000559873 LOC102724200A0A096LPH7 203 aaPredicted RBP7.49□□□□□ -1.21
USP3-216ENST00000559873 CTXND1A0A1B0GTU2 59 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 FRMD6-AS1P0C7T7 363 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 STAG3L2P0CL84 134 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 STAG3L3P0CL85 134 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 APOC4P55056 127 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 EBLN2Q6P2I7 272 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 DPPA3Q6W0C5 159 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 FOXI2Q6ZQN5 318 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 STHQ8IWL8 128 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 FAM24BQ8N5W8 94 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 RAB24Q969Q5 203 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 FAM167A-AS1Q96KT0 104 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 C19orf73Q9NVV2 129 aa7.49□□□□□ -1.21
USP3-216ENST00000559873 TRBV19A0A075B6N1 114 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 CXorf1O96002 111 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 OR10J4P0C629 311 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 NBEAP1P0C6P0 100 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 PYYP10082 97 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 RAB5CP51148 216 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 FAM74A1Q5RGS3 127 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 APRG1Q8IVJ8 170 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 RPP25LQ8N5L8 163 aaKnown RBP7.48□□□□□ -1.21
USP3-216ENST00000559873 ZNF738Q8NE65 137 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 BLNKQ8WV28 456 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 RNF141Q8WVD5 230 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 B9D2Q9BPU9 175 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 ZNF331Q9NQX6 463 aaPredicted RBP7.48□□□□□ -1.21
USP3-216ENST00000559873 TMEM167BQ9NRX6 74 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 ZNF586Q9NXT0 402 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 PRELID1Q9Y255 219 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 RFNGQ9Y644 331 aa7.48□□□□□ -1.21
USP3-216ENST00000559873 KIR2DL5BA0A0G2JN68 375 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 KIR2DL5BA0A0G2JPC4 375 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 H3BQ15 152 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 H3BTX0 84 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 SLC17A3O00476 420 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 ARL14EPLP0DKL9 152 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 HLA-DRB4P13762 266 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 NUTF2P61970 127 aaKnown RBP7.47□□□□□ -1.21
USP3-216ENST00000559873 PSG3Q16557 428 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 ACTL10Q5JWF8 245 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 MORN3Q6PF18 240 aaPredicted RBP7.47□□□□□ -1.21
USP3-216ENST00000559873 IQCF2Q8IXL9 164 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 KIR2DL5AQ8N109 375 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 LYPD1Q8N2G4 141 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 KIR2DL5BQ8NHK3 375 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 TMED6Q8WW62 240 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 FXYD5Q96DB9 178 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 PHYHIPLQ96FC7 376 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 SAV1Q9H4B6 383 aaPredicted RBP7.47□□□□□ -1.21
USP3-216ENST00000559873 HLA-DRB4X5D2U9 266 aa7.47□□□□□ -1.21
USP3-216ENST00000559873 PRKDCP78527 4128 aaKnown RBP7.46□□□□□ -1.21
USP3-216ENST00000559873 TRAV8-2A0A0B4J237 113 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 MAP1LC3B2A6NCE7 125 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 TEX46H3BTG2 121 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 UBE2CO00762 179 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 DUSP14O95147 198 aaKnown RBP7.46□□□□□ -1.22
USP3-216ENST00000559873 SNRPCP09234 159 aaKnown RBP7.46□□□□□ -1.22
USP3-216ENST00000559873 RNF182Q8N6D2 247 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 FAM213BQ8TBF2 198 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 RPUSD4Q96CM3 377 aaKnown RBP7.46□□□□□ -1.22
USP3-216ENST00000559873 MRPL53Q96EL3 112 aaKnown RBP7.46□□□□□ -1.22
USP3-216ENST00000559873 SAT2Q96F10 170 aaPredicted RBP7.46□□□□□ -1.22
USP3-216ENST00000559873 C17orf77Q96MU5 243 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 MAP1LC3BQ9GZQ8 125 aa7.46□□□□□ -1.22
USP3-216ENST00000559873 A0A0J9YX75 114 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 KNCNA6PVL3 124 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 HMGB3O15347 200 aaKnown RBP7.45□□□□□ -1.22
USP3-216ENST00000559873 RPL35AP18077 110 aaKnown RBP7.45□□□□□ -1.22
USP3-216ENST00000559873 GCHFRP30047 84 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 CSN1S1P47710 185 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 NKX2-5P52952 324 aaPredicted RBP7.45□□□□□ -1.22
USP3-216ENST00000559873 HIST1H1AQ02539 215 aaPredicted RBP7.45□□□□□ -1.22
USP3-216ENST00000559873 ZNF124Q15973 351 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 IGFL4Q6B9Z1 124 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 TRPT1Q86TN4 253 aaKnown RBP7.45□□□□□ -1.22
USP3-216ENST00000559873 OR4B1Q8NGF8 309 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 OR10J6PQ8NGY7 276 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 CMTM2Q8TAZ6 248 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 ZNF503Q96F45 646 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 CITED4Q96RK1 184 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 SPATA25Q9BR10 227 aa7.45□□□□□ -1.22
USP3-216ENST00000559873 C1QTNF4Q9BXJ3 329 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms