RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 B2MP61769 119 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 ATP5G2Q06055 141 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 LY6EQ16553 131 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 IGFL4Q6B9Z1 124 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 UQCC3Q6UW78 93 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 C15orf54Q8N8G6 183 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 NECAP1Q8NC96 275 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 OR10G4Q8NGN3 311 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 OR10G9Q8NGN4 311 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 OR10G7Q8NGN6 311 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 Q8WTZ3 238 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 GATAD1Q8WUU5 269 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 MARC2Q969Z3 335 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 EEF1AKMT3Q96AZ1 226 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 TXNDC17Q9BRA2 123 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 C20orf24Q9BUV8 137 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 MRPL32Q9BYC8 188 aaKnown RBP3.96□□□□□ -1.78
LDLR-209ENST00000558528 Q9HAA7 133 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 NRN1Q9NPD7 142 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 TNFRSF19Q9NS68 423 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 ZNF355PQ9NSJ1 428 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 ROS1P08922 2347 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 IGLV11-55A0A075B6I3 123 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 TRAV1-1A0A0B4J248 108 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 CTXND1A0A1B0GTU2 59 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 I3L2K1 104 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 NMBP08949 121 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 FRMD6-AS1P0C7T7 363 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 RD3LP0DJH9 198 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 PSG1P11464 419 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 OR10J1P30954 320 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 PSMB3P49720 205 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 RND2P52198 227 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 PLP1P60201 277 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 YPEL3P61236 119 aaPredicted RBP3.95□□□□□ -1.78
LDLR-209ENST00000558528 RHOBP62745 196 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 KRTAP1-1Q07627 177 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 ZNF616Q08AN1 781 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 PEA15Q15121 130 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 FFAR4Q5NUL3 377 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 C10orf55Q5SWW7 151 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 SPSB3Q6PJ21 355 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 CYP2G1PQ6ZSU1 146 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 EIF4E3Q8N5X7 224 aaKnown RBP3.95□□□□□ -1.78
LDLR-209ENST00000558528 OR5T1Q8NG75 326 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 OR10G8Q8NGN5 311 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 FAM213BQ8TBF2 198 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 MBD3L1Q8WWY6 194 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 ACY3Q96HD9 319 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 DUX5Q96PT3 197 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 GGTLC1Q9BX51 225 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 C21orf62Q9NYP8 219 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 PXMP4Q9Y6I8 212 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 COX11Q9Y6N1 276 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 USF3Q68DE3 2245 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 RYR1P21817 5038 aa3.95□□□□□ -1.78
LDLR-209ENST00000558528 TRBV9A0A0B4J1U6 114 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 A0A1B0GW64 132 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 FAM74A7A6NL05 159 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 SEC14L6B5MCN3 397 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 HYPMO75409 117 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 CXorf1O96002 111 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 TOMM40O96008 361 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 REG1AP05451 166 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 PAX6P26367 422 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 CDC34P49427 236 aaPredicted RBP3.94□□□□□ -1.78
LDLR-209ENST00000558528 SSBP2P81877 361 aaPredicted RBP3.94□□□□□ -1.78
LDLR-209ENST00000558528 RHOGP84095 191 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 ECSCRQ19T08 205 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 FAM74A3Q4VXF1 159 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 Q56UQ5 140 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 Q8N2B8 174 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 SIGLECL1Q8N7X8 197 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 OR51G1Q8NGK1 321 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 OR2T6Q8NHC8 308 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 LYPD6BQ8NI32 183 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 SFT2D1Q8WV19 159 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 NARS2Q96I59 477 aaKnown RBP3.94□□□□□ -1.78
LDLR-209ENST00000558528 MGST2Q99735 147 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 HSPB9Q9BQS6 159 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 NIPSNAP3BQ9BS92 247 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 FAM103A1Q9BTL3 118 aaKnown RBP3.94□□□□□ -1.78
LDLR-209ENST00000558528 RSG1Q9BU20 258 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 NKX6-2Q9C056 277 aaPredicted RBP3.94□□□□□ -1.78
LDLR-209ENST00000558528 MANBALQ9NQG1 85 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 TMEM167BQ9NRX6 74 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 RPRMQ9NS64 109 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 CSDC2Q9Y534 153 aaKnown RBP3.94□□□□□ -1.78
LDLR-209ENST00000558528 DMRT1Q9Y5R6 373 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 CMYA5Q8N3K9 4069 aa3.94□□□□□ -1.78
LDLR-209ENST00000558528 ARID1AO14497 2285 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 A0A1B0GUS0 222 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 MAP1LC3B2A6NCE7 125 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 KRBOX1C9JBD0 128 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 K7EIM0 57 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 BMPR1BO00238 502 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 COX7A2P2O60397 106 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 OR2J3O76001 311 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 IGHG4P01861 327 aa3.93□□□□□ -1.78
LDLR-209ENST00000558528 TRGV3P03979 118 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms