RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 NOTCH3Q9UM47 2321 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 TRAV25A0A0B4J276 109 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 A0A1B0GV50 99 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 H3BQ15 152 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 TSPAN4O14817 238 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 IGLC2P0DOY2 106 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 HIST1H1EP10412 219 aaKnown RBP7.22□□□□□ -1.25
CUX1-216ENST00000558469 GCHFRP30047 84 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 IFITM2Q01629 132 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 LRRC20Q8TCA0 184 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 BLNKQ8WV28 456 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 MBD3L1Q8WWY6 194 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 FXYD5Q96DB9 178 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 C17orf77Q96MU5 243 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 GPR61Q9BZJ8 451 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 HRH4Q9H3N8 390 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 TMPRSS5Q9H3S3 457 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 NRN1Q9NPD7 142 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 ZNF586Q9NXT0 402 aa7.22□□□□□ -1.25
CUX1-216ENST00000558469 A0A087X0K7 114 aa7.21□□□□□ -1.26
CUX1-216ENST00000558469 G3V4G9 280 aa7.21□□□□□ -1.26
CUX1-216ENST00000558469 NBEAP1P0C6P0 100 aa7.21□□□□□ -1.26
CUX1-216ENST00000558469 UBE2L3P68036 154 aaKnown RBP7.21□□□□□ -1.26
CUX1-216ENST00000558469 BLOC1S1P78537 153 aa7.21□□□□□ -1.26
CUX1-216ENST00000558469 GUK1Q16774 197 aa7.21□□□□□ -1.26
CUX1-216ENST00000558469 DCANP1Q8TF63 244 aa7.21□□□□□ -1.26
CUX1-216ENST00000558469 PCNPQ8WW12 178 aaKnown RBP7.21□□□□□ -1.26
CUX1-216ENST00000558469 SAT2Q96F10 170 aaPredicted RBP7.21□□□□□ -1.26
CUX1-216ENST00000558469 TRBV19A0A075B6N1 114 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 OR4C46A6NHA9 309 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 TEX46H3BTG2 121 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 K7EQG2 157 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 SLC17A3O00476 420 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 MEOX2P50222 304 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 TNP2Q05952 138 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 IGFL4Q6B9Z1 124 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 C16orf92Q96LL3 132 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 SPAG8Q99932 426 aaPredicted RBP7.2□□□□□ -1.26
CUX1-216ENST00000558469 TMEM167BQ9NRX6 74 aa7.2□□□□□ -1.26
CUX1-216ENST00000558469 TRAV2A0A0B4J234 112 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 TRAV1-1A0A0B4J248 108 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 NDUFB4O95168 129 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 HBE1P02100 147 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 ID1P41134 155 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 RANP62826 216 aaKnown RBP7.19□□□□□ -1.26
CUX1-216ENST00000558469 CCL20P78556 96 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 PDE6HQ13956 83 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 SAMD5Q5TGI4 173 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 ZNF767PQ75MW2 155 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 FAM24BQ8N5W8 94 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 RNF182Q8N6D2 247 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 SUN5Q8TC36 379 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 SLC50A1Q9BRV3 221 aa7.19□□□□□ -1.26
CUX1-216ENST00000558469 ZNF256Q9Y2P7 627 aaPredicted RBP7.19□□□□□ -1.26
CUX1-216ENST00000558469 AGRNO00468 2067 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 TRAV8-2A0A0B4J237 113 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 ISLRO14498 428 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 SOCS3O14543 225 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 ZNF688P0C7X2 276 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 HLA-DMBP28068 263 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 PSMB3P49720 205 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 KRTAP10-11P60412 298 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 UBE2G2P60604 165 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 SNRPD3P62318 126 aaKnown RBP7.18□□□□□ -1.26
CUX1-216ENST00000558469 PSG9Q00887 426 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 BEAN1Q3B7T3 259 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 SAMD13Q5VXD3 122 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 EXOC3-AS1Q8N2X6 119 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 LINC00052Q96N35 136 aa7.18□□□□□ -1.26
CUX1-216ENST00000558469 ZNF331Q9NQX6 463 aaPredicted RBP7.18□□□□□ -1.26
CUX1-216ENST00000558469 ZNF253O75346 499 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 NMBP08949 121 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 CD7P09564 240 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 PRB4P10163 310 aaPredicted RBP7.17□□□□□ -1.26
CUX1-216ENST00000558469 CD81P60033 236 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 RAB14P61106 215 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 EGFEM1PQ0D2K5 195 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 ICAM4Q14773 271 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 PSMG4Q5JS54 123 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 GTSCR1Q86UQ5 136 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 LYPD1Q8N2G4 141 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 LYPD6BQ8NI32 183 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 C20orf173Q96LM9 149 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 PRR25Q96S07 402 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 Q9H3A6 140 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 AAMDCQ9H7C9 122 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 GNG13Q9P2W3 67 aa7.17□□□□□ -1.26
CUX1-216ENST00000558469 ZMAT5Q9UDW3 170 aaKnown RBP7.17□□□□□ -1.26
CUX1-216ENST00000558469 YTHDF2Q9Y5A9 579 aaKnown RBP7.17□□□□□ -1.26
CUX1-216ENST00000558469 A0A1W2PRE2 83 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 PGPA6NDG6 321 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 ZNF705FA8MVS1 300 aaPredicted RBP7.16□□□□□ -1.26
CUX1-216ENST00000558469 OR11H12B2RN74 326 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 PAGE4O60829 102 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 PPT1P50897 306 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 DEFB131AP59861 70 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 SUMO1P63165 101 aaKnown RBP7.16□□□□□ -1.26
CUX1-216ENST00000558469 PSG3Q16557 428 aa7.16□□□□□ -1.26
CUX1-216ENST00000558469 CST9LP1Q5W188 147 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 343.8 ms