RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 A0A096LNJ9 63 aa13.85□□□□□ -0.19
SYNE3-202ENST00000553340 D6R8Y8 96 aa13.85□□□□□ -0.19
SYNE3-202ENST00000553340 FOXE3Q13461 319 aa13.85□□□□□ -0.19
SYNE3-202ENST00000553340 RPEQ96AT9 228 aa13.85□□□□□ -0.19
SYNE3-202ENST00000553340 SRSF8Q9BRL6 282 aaKnown RBP13.85□□□□□ -0.19
SYNE3-202ENST00000553340 SIGLEC8Q9NYZ4 499 aa13.85□□□□□ -0.19
SYNE3-202ENST00000553340 RALYQ9UKM9 306 aaKnown RBP13.85□□□□□ -0.19
SYNE3-202ENST00000553340 LOC389332A0A1B0GUA5 103 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 K7EIM0 57 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 CNIH1O95406 144 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 PRB4P10163 310 aaPredicted RBP13.84□□□□□ -0.19
SYNE3-202ENST00000553340 NHLH1Q02575 133 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 ZNF491Q8N8L2 437 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 OR1N2Q8NGR9 330 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 RNF125Q96EQ8 232 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 ZNF414Q96IQ9 312 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 M0R3E3 92 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 IL4P05112 153 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 FGF6P10767 208 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 IGF2-ASQ6U949 168 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 PRELID3AQ96N28 172 aa13.84□□□□□ -0.19
SYNE3-202ENST00000553340 APOBEC3AP31941 199 aaPredicted RBP13.83□□□□□ -0.19
SYNE3-202ENST00000553340 LOXL1Q08397 574 aaPredicted RBP13.83□□□□□ -0.19
SYNE3-202ENST00000553340 LGALS9BQ3B8N2 356 aa13.83□□□□□ -0.19
SYNE3-202ENST00000553340 LGALS9CQ6DKI2 356 aa13.83□□□□□ -0.19
SYNE3-202ENST00000553340 LYZL1Q6UWQ5 148 aa13.83□□□□□ -0.19
SYNE3-202ENST00000553340 SMIM15Q7Z3B0 74 aa13.83□□□□□ -0.19
SYNE3-202ENST00000553340 ORMDL3Q8N138 153 aa13.83□□□□□ -0.19
SYNE3-202ENST00000553340 C8orf49Q96NF6 230 aa13.83□□□□□ -0.19
SYNE3-202ENST00000553340 RNF5Q99942 180 aa13.83□□□□□ -0.19
SYNE3-202ENST00000553340 PKDREJQ9NTG1 2253 aa13.83□□□□□ -0.2
SYNE3-202ENST00000553340 TMEM189A5PLL7 270 aa13.83□□□□□ -0.2
SYNE3-202ENST00000553340 K7ERU9 68 aa13.83□□□□□ -0.2
SYNE3-202ENST00000553340 KLK10O43240 276 aa13.83□□□□□ -0.2
SYNE3-202ENST00000553340 FCGR2BP31994 310 aaPredicted RBP13.83□□□□□ -0.2
SYNE3-202ENST00000553340 FAM104BQ5XKR9 115 aa13.83□□□□□ -0.2
SYNE3-202ENST00000553340 AAMDCQ9H7C9 122 aa13.83□□□□□ -0.2
SYNE3-202ENST00000553340 U3KQK5 164 aa13.83□□□□□ -0.2
SYNE3-202ENST00000553340 MRPS12O15235 138 aaKnown RBP13.82□□□□□ -0.2
SYNE3-202ENST00000553340 COX7A1P24310 79 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 RABAC1Q9UI14 185 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 A6NDN8 102 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 GAGE10A6NGK3 116 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 PRRG2O14669 202 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 AMN1Q8IY45 258 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 AP1S3Q96PC3 154 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 CUL9Q8IWT3 2517 aa13.82□□□□□ -0.2
SYNE3-202ENST00000553340 SMG1Q96Q15 3661 aaKnown RBP13.81□□□□□ -0.2
SYNE3-202ENST00000553340 TMEM213A2RRL7 107 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 S100A7AQ86SG5 101 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 TMSB15BA0A087X1C1 80 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 UQCRFS1P47985 274 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 PDE6HQ13956 83 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 BOD1L2Q8IYS8 172 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 PIP4P2Q8N4L2 257 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 BDP1A6H8Y1 2624 aa13.81□□□□□ -0.2
SYNE3-202ENST00000553340 CACNG7P62955 275 aa13.8□□□□□ -0.2
SYNE3-202ENST00000553340 WI2-2373I1.2A0A1W2PRP0 233 aa13.8□□□□□ -0.2
SYNE3-202ENST00000553340 H3BRM9 83 aa13.8□□□□□ -0.2
SYNE3-202ENST00000553340 HBDP02042 147 aa13.8□□□□□ -0.2
SYNE3-202ENST00000553340 GTF2H5Q6ZYL4 71 aa13.8□□□□□ -0.2
SYNE3-202ENST00000553340 CEP250Q9BV73 2442 aa13.8□□□□□ -0.2
SYNE3-202ENST00000553340 OR9G4Q8NGQ1 327 aa13.79□□□□□ -0.2
SYNE3-202ENST00000553340 C9orf118A6NHY6 69 aa13.79□□□□□ -0.2
SYNE3-202ENST00000553340 E7EQL1 145 aa13.79□□□□□ -0.2
SYNE3-202ENST00000553340 SH2D1AO60880 128 aa13.79□□□□□ -0.2
SYNE3-202ENST00000553340 MRPL51Q4U2R6 128 aaKnown RBP13.79□□□□□ -0.2
SYNE3-202ENST00000553340 RAB1BQ9H0U4 201 aa13.79□□□□□ -0.2
SYNE3-202ENST00000553340 A1L4Q6 167 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 SMAD7O15105 426 aaKnown RBP13.78□□□□□ -0.2
SYNE3-202ENST00000553340 PPIAL4CA0A0B4J2A2 164 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 SHISA9B4DS77 424 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 GNG7O60262 68 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 PPIAL4GP0DN37 164 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 HSD52Q0P140 79 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 THYN1Q9P016 225 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 SH3BGRL2Q9UJC5 107 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 ZGRF1Q86YA3 2104 aa13.78□□□□□ -0.2
SYNE3-202ENST00000553340 SIVA1O15304 175 aa13.77□□□□□ -0.2
SYNE3-202ENST00000553340 IFI27L1Q96BM0 104 aa13.77□□□□□ -0.2
SYNE3-202ENST00000553340 JKAMPQ9P055 326 aa13.77□□□□□ -0.2
SYNE3-202ENST00000553340 LY6LH3BQJ8 138 aa13.77□□□□□ -0.21
SYNE3-202ENST00000553340 FXYD7P58549 80 aa13.77□□□□□ -0.21
SYNE3-202ENST00000553340 UFSP1Q6NVU6 142 aa13.77□□□□□ -0.21
SYNE3-202ENST00000553340 TIMM23O14925 209 aa13.77□□□□□ -0.21
SYNE3-202ENST00000553340 CKS2P33552 79 aa13.77□□□□□ -0.21
SYNE3-202ENST00000553340 OR4X2Q8NGF9 303 aa13.77□□□□□ -0.21
SYNE3-202ENST00000553340 PAX8Q06710 450 aa13.76□□□□□ -0.21
SYNE3-202ENST00000553340 COL25A1Q9BXS0 654 aaPredicted RBP13.76□□□□□ -0.21
SYNE3-202ENST00000553340 S4R3C0 116 aa13.76□□□□□ -0.21
SYNE3-202ENST00000553340 NBR2O15453 112 aa13.76□□□□□ -0.21
SYNE3-202ENST00000553340 TCTAP57738 103 aa13.76□□□□□ -0.21
SYNE3-202ENST00000553340 KLF17Q5JT82 389 aaPredicted RBP13.76□□□□□ -0.21
SYNE3-202ENST00000553340 BCL6BQ8N143 479 aaPredicted RBP13.76□□□□□ -0.21
SYNE3-202ENST00000553340 MAP1BP46821 2468 aaKnown RBP13.75□□□□□ -0.21
SYNE3-202ENST00000553340 H3BUT2 72 aa13.75□□□□□ -0.21
SYNE3-202ENST00000553340 KIR3DS1Q14943 382 aa13.75□□□□□ -0.21
SYNE3-202ENST00000553340 TWIST1Q15672 202 aa13.75□□□□□ -0.21
SYNE3-202ENST00000553340 COX8CQ7Z4L0 72 aa13.75□□□□□ -0.21
SYNE3-202ENST00000553340 NPYP01303 97 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms