RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CRIP1P50238 77 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 ARF6P62330 175 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 RBPJQ06330 500 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 CT83Q5H943 113 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 MUC15Q8N387 334 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 KLHDC1Q8N7A1 406 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 TNFRSF14Q92956 283 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 TPPP3Q9BW30 176 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 NGBQ9NPG2 151 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 TRBV19A0A075B6N1 114 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 LY6LH3BQJ8 138 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 SYS1-DBNDD2H3BUS1 97 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 LEPROTL1O95214 131 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 IGHV3-23P01764 117 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 IL4P05112 153 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 FCGR2BP31994 310 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-213ENST00000552720 CDSNQ15517 529 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 ZNF672Q499Z4 452 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-213ENST00000552720 SIGLEC15Q6ZMC9 328 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 ERASQ7Z444 233 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 ZNF491Q8N8L2 437 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 C8orf49Q96NF6 230 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 ZFAND3Q9H8U3 227 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 MUC21A0A0G2JKD1 596 aa5.9□□□□□ -1.46
LIMA1-213ENST00000552720 MUC21A0A140T8X8 626 aa5.9□□□□□ -1.46
LIMA1-213ENST00000552720 HOXB4P17483 251 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-213ENST00000552720 PAX2Q02962 417 aa5.9□□□□□ -1.46
LIMA1-213ENST00000552720 MUC21Q5SSG8 566 aa5.9□□□□□ -1.46
LIMA1-213ENST00000552720 CRYBG3Q68DQ2 2970 aa5.9□□□□□ -1.46
LIMA1-213ENST00000552720 TMEM14CQ9P0S9 112 aa5.9□□□□□ -1.46
LIMA1-213ENST00000552720 SPTBN4Q9H254 2564 aa5.9□□□□□ -1.46
LIMA1-213ENST00000552720 CELSR2Q9HCU4 2923 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 TMSB15BA0A087X1C1 80 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 H3BRN7 92 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 HLA-DRB1P01911 266 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 FAM106CPP0CH98 169 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 FOXE3Q13461 319 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 FAM106AQ4KMX7 169 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 RNF125Q96EQ8 232 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 SHANK2-AS3Q9BTD1 123 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 GFRA4Q9GZZ7 299 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 PSG8Q9UQ74 426 aa5.9□□□□□ -1.47
LIMA1-213ENST00000552720 IGHV3OR16-8A0A075B7F1 116 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.89□□□□□ -1.47
LIMA1-213ENST00000552720 RNF223E7ERA6 249 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 MRPS12O15235 138 aaKnown RBP5.89□□□□□ -1.47
LIMA1-213ENST00000552720 HTR1DP28221 377 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 HES1Q14469 280 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 IGFL4Q6B9Z1 124 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 BPIFA4PQ86YQ2 179 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 CFHR4Q92496 578 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 ZNF414Q96IQ9 312 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 NDFIP1Q9BT67 221 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 SCNM1Q9BWG6 230 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 MRPS16Q9Y3D3 137 aaKnown RBP5.89□□□□□ -1.47
LIMA1-213ENST00000552720 A0A1B0GUT8 65 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 CCL25O15444 150 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 NBR2O15453 112 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 CRXO43186 299 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-213ENST00000552720 NDPQ00604 133 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 RELQ04864 619 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-213ENST00000552720 FOXC1Q12948 553 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 DYNAPQ8N1N2 210 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 CHCHD1Q96BP2 118 aaKnown RBP5.89□□□□□ -1.47
LIMA1-213ENST00000552720 SOX21Q9Y651 276 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-213ENST00000552720 ITPR1Q14643 2758 aa5.89□□□□□ -1.47
LIMA1-213ENST00000552720 CHD8Q9HCK8 2581 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 FXYD7P58549 80 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 LOXL1Q08397 574 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-213ENST00000552720 PSG3Q16557 428 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 MPV17L2Q567V2 206 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 NEU4Q8WWR8 484 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-213ENST00000552720 FANCD2OSQ96PS1 177 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 IGHV3-35A0A0C4DH35 117 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 TMEM213A2RRL7 107 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 FAM231BA6NCW3 169 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 F8W735 103 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-213ENST00000552720 GNG7O60262 68 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 NCR2O95944 276 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 LIPFP07098 398 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 TMEM75Q8N9X5 138 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 HIVEP3Q5T1R4 2406 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 NCOR2Q9Y618 2525 aa5.88□□□□□ -1.47
LIMA1-213ENST00000552720 IGKV2-40A0A087WW87 121 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-213ENST00000552720 LOC389332A0A1B0GUA5 103 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 SNAI2O43623 268 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 IGKV2D-40P01614 121 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-213ENST00000552720 HLA-DMBP28068 263 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 LY6G5BQ8NDX9 201 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 Q8TAT8 98 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 VKORC1Q9BQB6 163 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 C1RLQ9NZP8 487 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 DPM3Q9P2X0 92 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 SERTM2A0A1B0GWG4 89 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 WI2-2373I1.2A0A1W2PRP0 233 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 NCBP2LA6PVI3 153 aaKnown RBP5.87□□□□□ -1.47
LIMA1-213ENST00000552720 IFI27P40305 119 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-213ENST00000552720 PTTG1IPP53801 180 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 TCTAP57738 103 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 MAP1LC3CQ9BXW4 147 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms