RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ALKBH7Q9BT30 221 aaPredicted RBP12.02□□□□□ -0.49
CUX1-214ENST00000550008 MCRIP2Q9BUT9 160 aaKnown RBP12.02□□□□□ -0.49
CUX1-214ENST00000550008 FABP5P3A8MUU1 101 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 DLEU1O43261 78 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 GNB1LQ9BYB4 327 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 ZFP30Q9Y2G7 519 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 A0A0G2JLM5 398 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 EVI2AP22794 236 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 Q1RN00 199 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 RAB37Q96AX2 223 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 C2orf88Q9BSF0 95 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 TRAV9-1A0A075B6T8 112 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 ATP6V0E1O15342 81 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 BEND2Q8NDZ0 799 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 HIVEP2P31629 2446 aa12.01□□□□□ -0.49
CUX1-214ENST00000550008 A6NDN8 102 aa12□□□□□ -0.49
CUX1-214ENST00000550008 MINOS1Q5TGZ0 78 aa12□□□□□ -0.49
CUX1-214ENST00000550008 MINOS1-NBL1R4GNA1 71 aa12□□□□□ -0.49
CUX1-214ENST00000550008 ACTL10Q5JWF8 245 aa12□□□□□ -0.49
CUX1-214ENST00000550008 SLC25A34Q6PIV7 304 aa12□□□□□ -0.49
CUX1-214ENST00000550008 NCOR1P1Q9H4R4 102 aa12□□□□□ -0.49
CUX1-214ENST00000550008 ZNF562Q6V9R5 426 aa12□□□□□ -0.49
CUX1-214ENST00000550008 MOB4Q9Y3A3 225 aa12□□□□□ -0.49
CUX1-214ENST00000550008 WDFY4Q6ZS81 3184 aa12□□□□□ -0.49
CUX1-214ENST00000550008 SZT2Q5T011 3432 aa12□□□□□ -0.49
CUX1-214ENST00000550008 E7EUB6 86 aa12□□□□□ -0.49
CUX1-214ENST00000550008 NIT1Q86X76 327 aa12□□□□□ -0.49
CUX1-214ENST00000550008 DMRTC2Q8IXT2 367 aaPredicted RBP12□□□□□ -0.49
CUX1-214ENST00000550008 ORMDL3Q8N138 153 aa12□□□□□ -0.49
CUX1-214ENST00000550008 IGHV2-70P01814 119 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 BRWD1-AS2P59051 145 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 SRSF9Q13242 221 aaKnown RBP eCLIP11.99□□□□□ -0.49
CUX1-214ENST00000550008 ZNF56Q15929 161 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 MORN5Q5VZ52 161 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 SMIM12Q96EX1 92 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 RNF5Q99942 180 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 PRDM13Q9H4Q3 707 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 KIAA1549Q9HCM3 1950 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 SNRPD3P62318 126 aaKnown RBP11.99□□□□□ -0.49
CUX1-214ENST00000550008 LCNL1Q6ZST4 164 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 PRR20EP86478 221 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 PRR20CP86479 221 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 PRR20DP86480 221 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 PRR20BP86481 221 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 PRR20AP86496 221 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 MAJINQ3KP22 176 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 C12orf54Q6X4T0 127 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 SLC25A2Q9BXI2 301 aa11.99□□□□□ -0.49
CUX1-214ENST00000550008 IGF2-ASQ6U949 168 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 TMEM160Q9NX00 188 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 TDGF1P3P51864 188 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 MIEN1Q9BRT3 115 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 SCGB1C2P0DMR2 95 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 RNF182Q8N6D2 247 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 DDB2Q92466 427 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 ZNF414Q96IQ9 312 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 KAAG1Q9UBP8 84 aa11.98□□□□□ -0.49
CUX1-214ENST00000550008 LINC00614P0C842 121 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 GCSHP23434 173 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 LINC00311Q8N616 119 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 ERCC8Q13216 396 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 POU2AF1Q16633 256 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 LYZL1Q6UWQ5 148 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 NPFFR1Q9GZQ6 430 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 TRAV8-6A0A0B4J262 113 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 IGLC7A0M8Q6 106 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 FNDC10F2Z333 226 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 H3BVH4 76 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 GUSBP1Q15486 140 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 ODF3L1Q8IXM7 274 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 C17orf77Q96MU5 243 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 NCKAP5O14513 1909 aa11.97□□□□□ -0.49
CUX1-214ENST00000550008 EPG5Q9HCE0 2579 aa11.96□□□□□ -0.49
CUX1-214ENST00000550008 ZNF688P0C7X2 276 aa11.96□□□□□ -0.49
CUX1-214ENST00000550008 FAM120AOSQ5T036 256 aa11.96□□□□□ -0.49
CUX1-214ENST00000550008 ITLN2Q8WWU7 325 aaPredicted RBP11.96□□□□□ -0.49
CUX1-214ENST00000550008 C1orf229Q6ZS94 237 aaPredicted RBP11.96□□□□□ -0.5
CUX1-214ENST00000550008 SHANK2-AS3Q9BTD1 123 aa11.96□□□□□ -0.5
CUX1-214ENST00000550008 LSM4Q9Y4Z0 139 aaKnown RBP11.96□□□□□ -0.5
CUX1-214ENST00000550008 OOSP1A8MZH6 123 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 SMKR1H3BMG3 65 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 ASIPP42127 132 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 ZNF295-AS1Q8N0V1 137 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 SLC50A1Q9BRV3 221 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 IGKV1OR2-108A0A075B7D4 117 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 B4DSR2 109 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 SIGLEC15Q6ZMC9 328 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 LAMTOR2Q9Y2Q5 125 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 IGLC1P0CG04 106 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 ADORA2A-AS1P86434 159 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 ARMS2P0C7Q2 107 aa11.95□□□□□ -0.5
CUX1-214ENST00000550008 SOX21Q9Y651 276 aaPredicted RBP11.95□□□□□ -0.5
CUX1-214ENST00000550008 MTORP42345 2549 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 HCFC1P51610 2035 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 PRB1P04280 392 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 CD7P09564 240 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 DAZAP2Q15038 168 aaPredicted RBP11.94□□□□□ -0.5
CUX1-214ENST00000550008 LDLRAD2Q5SZI1 272 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 MRPL36Q9P0J6 103 aaKnown RBP11.94□□□□□ -0.5
CUX1-214ENST00000550008 D6R8Y8 96 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms