RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NOL4LQ96MY1 436 aaPredicted RBP12.71□□□□□ -0.37
COL4A1-204ENST00000543140 BBC3Q96PG8 261 aaPredicted RBP12.71□□□□□ -0.37
COL4A1-204ENST00000543140 SSBP4Q9BWG4 385 aaPredicted RBP12.71□□□□□ -0.37
COL4A1-204ENST00000543140 PRSS22Q9GZN4 317 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 SRIP30626 198 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 COX19Q49B96 90 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 CSPG4Q6UVK1 2322 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 S100A7AQ86SG5 101 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 VN1R17PQ8TDU5 208 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 RABAC1Q9UI14 185 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 NDUFS8O00217 210 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 SCGB2A1O75556 95 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 CD33P20138 364 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 COL8A1P27658 744 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 CLEC19AQ6UXS0 136 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 GTSF1Q8WW33 167 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 TXN2Q99757 166 aa12.7□□□□□ -0.38
COL4A1-204ENST00000543140 ANKRD17O75179 2603 aaKnown RBP12.69□□□□□ -0.38
COL4A1-204ENST00000543140 DIRC3C9JPN6 131 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 LY6EQ16553 131 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 IGFL4Q6B9Z1 124 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 LYPD1Q8N2G4 141 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 AAMDCQ9H7C9 122 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 ZNF492Q9P255 531 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 A8MWL6 223 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 Q0VG73 95 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 TOMM20LQ6UXN7 152 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 OR5R1Q8NH85 324 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 ZC2HC1AQ96GY0 325 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 PGLYRP4Q96LB8 373 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 CCDC140Q96MF4 163 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 PSG8Q9UQ74 426 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 MOB4Q9Y3A3 225 aa12.69□□□□□ -0.38
COL4A1-204ENST00000543140 USP9YO00507 2555 aaPredicted RBP12.69□□□□□ -0.38
COL4A1-204ENST00000543140 A0A1B0GV90 55 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 ZNF785A8K8V0 405 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 K7EQM0 130 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 ZNF253O75346 499 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 GOSR1O95249 250 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 RPL7P18124 248 aaKnown RBP12.68□□□□□ -0.38
COL4A1-204ENST00000543140 PSG3Q16557 428 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 TMEM75Q8N9X5 138 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 OR2D3Q8NGH3 330 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 WIPF2Q8TF74 440 aaPredicted RBP12.68□□□□□ -0.38
COL4A1-204ENST00000543140 RCHY1Q96PM5 261 aa12.68□□□□□ -0.38
COL4A1-204ENST00000543140 IGHV3-66A0A0C4DH42 116 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 MSMBP08118 114 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 SPOCK3Q9BQ16 436 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 SMAD5-AS1Q9Y6J3 95 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 IGHV3OR16-13A0A075B7E8 117 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 IGHV3-74A0A0B4J1X5 117 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 SCGB1D1O95968 90 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 TPPP2P59282 170 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 PDE6HQ13956 83 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 SAMD10Q9BYL1 202 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 EPG5Q9HCE0 2579 aa12.67□□□□□ -0.38
COL4A1-204ENST00000543140 DNLZQ5SXM8 178 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 C8orf49Q96NF6 230 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 IGKV2-40A0A087WW87 121 aaPredicted RBP12.66□□□□□ -0.38
COL4A1-204ENST00000543140 TRAV41A0A0B4J266 112 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 A1L4Q6 167 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 IGKV2D-40P01614 121 aaPredicted RBP12.66□□□□□ -0.38
COL4A1-204ENST00000543140 HLA-DMBP28068 263 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 IQCJQ1A5X6 159 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 RASL11AQ6T310 242 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 HIF1ANQ9NWT6 349 aa12.66□□□□□ -0.38
COL4A1-204ENST00000543140 IGHV3-49A0A0A0MS15 119 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 H3BUX3 64 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 ZNF207O43670 478 aaKnown RBP12.65□□□□□ -0.38
COL4A1-204ENST00000543140 CT83Q5H943 113 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 Q6ZWC4 215 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 ZFAND3Q9H8U3 227 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 ZFP30Q9Y2G7 519 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 DDTP30046 118 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 CSN1S1P47710 185 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 PSG9Q00887 426 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 EEF1AKMT3Q96AZ1 226 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 MEGF9Q9H1U4 602 aa12.65□□□□□ -0.38
COL4A1-204ENST00000543140 TRBV6-1A0A0K0K1D8 114 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 A0A1B0GXF2 115 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 ZNF705FA8MVS1 300 aaPredicted RBP12.64□□□□□ -0.39
COL4A1-204ENST00000543140 NPIPB6E9PJ23 425 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 AVPP01185 164 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 ESDP10768 282 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 CRIP1P50238 77 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 OR10J3Q5JRS4 329 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 FBN2P35556 2912 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 PAFAH1B2P68402 229 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 HBBP68871 147 aa12.64□□□□□ -0.39
COL4A1-204ENST00000543140 RBPMS2Q6ZRY4 209 aaKnown RBP12.64□□□□□ -0.39
COL4A1-204ENST00000543140 PKIAP61925 76 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 ATP5G2Q06055 141 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 KLK9Q2XQG4 91 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 ATP5L2Q7Z4Y8 100 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 ZNF664Q8N3J9 261 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 KLK9Q9UKQ9 250 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 ZANQ9Y493 2812 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 APOHP02749 345 aaPredicted RBP12.63□□□□□ -0.39
COL4A1-204ENST00000543140 C18orf32Q8TCD1 76 aa12.63□□□□□ -0.39
COL4A1-204ENST00000543140 A0A1W2PS18 150 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms