RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 FBN2P35556 2912 aa13.27□□□□□ -0.29
USP28-208ENST00000540438 NF1P21359 2839 aa13.27□□□□□ -0.29
USP28-208ENST00000540438 HLA-DRB1P01911 266 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 HOXB4P17483 251 aaPredicted RBP13.26□□□□□ -0.29
USP28-208ENST00000540438 LCNL1Q6ZST4 164 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 LINC00469Q8N7U9 141 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 VAMP8Q9BV40 100 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 TEX15Q9BXT5 2789 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 PPIFP30405 207 aaKnown RBP13.26□□□□□ -0.29
USP28-208ENST00000540438 WDR73Q6P4I2 378 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 RNF182Q8N6D2 247 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 IGKV3-7A0A075B6H7 116 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 J3KRW8 73 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 HLA-DQA1P01909 254 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 SAA4P35542 130 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 Q86TA4 180 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 NIT1Q86X76 327 aa13.26□□□□□ -0.29
USP28-208ENST00000540438 M0R2Z0 102 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 ZNF324O75467 553 aaPredicted RBP13.25□□□□□ -0.29
USP28-208ENST00000540438 IGLV2-11P01706 119 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 ARMS2P0C7Q2 107 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 CEACAM3P40198 252 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 CYB5R2Q6BCY4 276 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 BPIFA4PQ86YQ2 179 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 OR4F17Q8NGA8 305 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 KCNS1Q96KK3 526 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 USP24Q9UPU5 2620 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 SERTM2A0A1B0GWG4 89 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 LY6EQ16553 131 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 FBXL19-AS1Q494R0 122 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 UNQ5815/PRO19632Q6UWF5 114 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 SPATA12Q7Z6I5 190 aa13.25□□□□□ -0.29
USP28-208ENST00000540438 MRPL27Q9P0M9 148 aaKnown RBP13.25□□□□□ -0.29
USP28-208ENST00000540438 F8W735 103 aaPredicted RBP13.24□□□□□ -0.29
USP28-208ENST00000540438 PIP4P2Q8N4L2 257 aa13.24□□□□□ -0.29
USP28-208ENST00000540438 STXBP6Q8NFX7 210 aa13.24□□□□□ -0.29
USP28-208ENST00000540438 OR11H6Q8NGC7 330 aa13.24□□□□□ -0.29
USP28-208ENST00000540438 MLST8Q9BVC4 326 aa13.24□□□□□ -0.29
USP28-208ENST00000540438 C21orf62Q9NYP8 219 aa13.24□□□□□ -0.29
USP28-208ENST00000540438 TRBV19A0A075B6N1 114 aa13.24□□□□□ -0.29
USP28-208ENST00000540438 LOC389332A0A1B0GUA5 103 aa13.24□□□□□ -0.29
USP28-208ENST00000540438 SPRY2O43597 315 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 CRIP1P50238 77 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 Q0VG73 95 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 Q6ZVH6 145 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 IGHV7-81A0A0B4J1V7 117 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 TOMM40O96008 361 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 LTAP01374 205 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 CLEC3BP05452 202 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 DEFB1P60022 68 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 ERCC8Q13216 396 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 C1orf194Q5T5A4 169 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 SHANK2-AS3Q9BTD1 123 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 CHEK1O14757 476 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 ATP6V0E1O15342 81 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 C15orf32Q32M92 178 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 EBLN2Q6P2I7 272 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 CLEC19AQ6UXS0 136 aa13.23□□□□□ -0.29
USP28-208ENST00000540438 ALKBH7Q9BT30 221 aaPredicted RBP13.23□□□□□ -0.29
USP28-208ENST00000540438 NPIPB5A8MRT5 1133 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 PAFAH1B2P68402 229 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 SIGLEC15Q6ZMC9 328 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 Q6ZQT7 251 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 MAPK1IP1LQ8NDC0 245 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 BORCS7Q96B45 105 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 PSG8Q9UQ74 426 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 APOHP02749 345 aaPredicted RBP13.22□□□□□ -0.29
USP28-208ENST00000540438 Q8N976 141 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 URB1-AS1Q96HZ7 61 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 VGLL1Q99990 258 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 C1RLQ9NZP8 487 aa13.22□□□□□ -0.29
USP28-208ENST00000540438 ZMAT5Q9UDW3 170 aaKnown RBP13.22□□□□□ -0.29
USP28-208ENST00000540438 ODF3BA8MYP8 253 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 EGR2P11161 476 aaPredicted RBP13.21□□□□□ -0.29
USP28-208ENST00000540438 SPATA45Q537H7 98 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 ZNF414Q96IQ9 312 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 TMEM213A2RRL7 107 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 A8MWL6 223 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 MT-ND6P03923 174 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 MFAP4P55083 255 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 UCNP55089 124 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 HBBP68871 147 aa13.21□□□□□ -0.29
USP28-208ENST00000540438 WNK1Q9H4A3 2382 aa13.21□□□□□ -0.3
USP28-208ENST00000540438 DMRTA1Q5VZB9 504 aa13.21□□□□□ -0.3
USP28-208ENST00000540438 ZNF562Q6V9R5 426 aa13.21□□□□□ -0.3
USP28-208ENST00000540438 ERASQ7Z444 233 aa13.21□□□□□ -0.3
USP28-208ENST00000540438 FMC1Q96HJ9 113 aa13.21□□□□□ -0.3
USP28-208ENST00000540438 OTORQ9NRC9 128 aa13.21□□□□□ -0.3
USP28-208ENST00000540438 IGLV11-55A0A075B6I3 123 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 SMKR1H3BMG3 65 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 H3BRN7 92 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 FAM106CPP0CH98 169 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 FAM106AQ4KMX7 169 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 KLF12Q9Y4X4 402 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 TRAV9-1A0A075B6T8 112 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 PRAC2D3DTV9 90 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 CTSGP08311 255 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 WFDC3Q8IUB2 231 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 Q8N9W7 124 aa13.2□□□□□ -0.3
USP28-208ENST00000540438 IGLC2P0DOY2 106 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms