RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 HOXC5Q00444 222 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 TMEM241Q24JQ0 296 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 DEFB109BQ30KR1 87 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 CROCCP2Q86T23 111 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 ZNF695Q8IW36 515 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 TCTEX1D1Q8N7M0 179 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 OR5H2Q8NGV7 314 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 TERB2Q8NHR7 220 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 TOMM6Q96B49 74 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 BORCS8Q96FH0 119 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 C16orf74Q96GX8 76 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 PSMG3Q9BT73 122 aaPredicted RBP3.25□□□□□ -1.89
CD44-220ENST00000525688 AICDAQ9GZX7 198 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 RNF122Q9H9V4 155 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 SND1-IT1Q9HBX3 110 aa3.25□□□□□ -1.89
CD44-220ENST00000525688 AGRNO00468 2067 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 MED13Q9UHV7 2174 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 IZUMO1RA6ND01 250 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 ARRDC5A6NEK1 342 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 GABARAPH6UMI1 98 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 J3QR89 54 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 K7EM74 188 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 M0R143 59 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 LY6G6DO95868 133 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 HLA-DQB1P01920 261 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 STATHP02808 62 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 SHBGP04278 402 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 PRB1P04280 392 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 COPZ1P61923 177 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 RTL8BQ17RB0 113 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 DEFB134Q4QY38 66 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 SLC25A29Q8N8R3 303 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 OR4K5Q8NGD3 323 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 RAB2BQ8WUD1 216 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 SFT2D1Q8WV19 159 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 CMBLQ96DG6 245 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 TEX37Q96LM6 180 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 MRPL57Q9BQC6 102 aaKnown RBP3.24□□□□□ -1.89
CD44-220ENST00000525688 MRPS16Q9Y3D3 137 aaKnown RBP3.24□□□□□ -1.89
CD44-220ENST00000525688 CCDC88CQ9P219 2028 aa3.24□□□□□ -1.89
CD44-220ENST00000525688 IGKV3D-11A0A0A0MRZ8 115 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 TRAV41A0A0B4J266 112 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 LOC107984640A0A0U1RRK4 108 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 ZNF860A6NHJ4 632 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 IGLL5B9A064 214 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 RBFOX2O43251 390 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-220ENST00000525688 UTP20O75691 2785 aaKnown RBP3.23□□□□□ -1.89
CD44-220ENST00000525688 IGKV1-39P01597 117 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 TRGC2P03986 189 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 IGKV1D-39P04432 117 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 GPX1P07203 203 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 COX6A1P12074 109 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 KRTAP10-6P60371 365 aaPredicted RBP3.23□□□□□ -1.89
CD44-220ENST00000525688 VMA21Q3ZAQ7 101 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 MPV17L2Q567V2 206 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 LDLRAD2Q5SZI1 272 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 AMMECR1LQ6DCA0 310 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 GLIPR1L1Q6UWM5 242 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 ZDHHC22Q8N966 263 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 ZNF709Q8N972 641 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 PLPP5Q8NEB5 264 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 FDCSPQ8NFU4 85 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 OR11G2Q8NGC1 345 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 OR51A4Q8NGJ6 313 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 RPS4Y2Q8TD47 263 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 PSMF1Q92530 271 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 CHAC1Q9BUX1 264 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 OTORQ9NRC9 128 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 SCN3BQ9NY72 215 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 NAT8Q9UHE5 227 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 TP53TG3Q9ULZ0 132 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 LRRK2Q5S007 2527 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 NBASA2RRP1 2371 aa3.23□□□□□ -1.89
CD44-220ENST00000525688 RP1L1Q8IWN7 2480 aaPredicted RBP3.22□□□□□ -1.89
CD44-220ENST00000525688 CNTRLQ7Z7A1 2325 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 SCN3AQ9NY46 2000 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 ADGRG4Q8IZF6 3080 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 IGHV3-72A0A0B4J1Y9 119 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 IGKV1-6A0A0C4DH72 117 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 CCL25O15444 150 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 SEC11BP0C7V7 166 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 INAFM2P0DMQ5 153 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 LINC00694P0DN24 101 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 ZNF823P16415 610 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 RBMXP38159 391 aaKnown RBP3.22□□□□□ -1.89
CD44-220ENST00000525688 EIF2B2P49770 351 aaKnown RBP3.22□□□□□ -1.89
CD44-220ENST00000525688 INSL3P51460 131 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 BTG2P78543 158 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 TMEM183BQ1AE95 376 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 ZNF678Q5SXM1 525 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 LAIR2Q6ISS4 152 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 SLC25A34Q6PIV7 304 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 IGFL3Q6UXB1 125 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 TMEM14EPQ6UXP3 125 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 LCA10Q71F78 164 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 RPS27LQ71UM5 84 aaKnown RBP3.22□□□□□ -1.89
CD44-220ENST00000525688 PDPNQ86YL7 162 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 GPHB5Q86YW7 130 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 SNX29P2Q8IUI4 249 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 TMEM183AQ8IXX5 376 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 270.4 ms